André Gomes-Dos-Santos

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 34

Top Topics

Gene Expression

High Throughput Sequencing

Top Venues

Mitochondrial DNA. Part B, Resources

Scientific data

GigaByte (Hong Kong, China)

This page only lists publications with an associated author ORCID identifier.

Publications

Ana Matos, André Gomes-Dos-Santos, Ümit Kebapçı, Mustafa Emre Gürlek, Elsa Froufe, Manuel Lopes-Lima
The complete female mitogenome of Potomida semirugata (Lamarck, 1819). Mitochondrial DNA. Part B, Resources 9 (7) (2024)
Ana Matos, André Gomes-Dos-Santos, Ümit Kebapçı, Mustafa Emre Gürlek, Elsa Froufe, Manuel Lopes-Lima
The complete female mitogenome of Potomida semirugata (Lamarck, 1819). Mitochondrial DNA. Part B, Resources 9 (7) (2024)
Ana Matos, André Gomes-Dos-Santos, Amílcar Teixeira, Simone G P Varandas, Ronaldo Sousa, Ioannis Karaouzas, Stamatis Zogaris, Elsa Froufe, Manuel Lopes-Lima
The complete mitochondrial genome of Potomida acarnanica (Kobelt, 1879). Mitochondrial DNA. Part B, Resources 9 (6) (2024)
Ana Matos, André Gomes-Dos-Santos, Amílcar Teixeira, Simone G P Varandas, Ronaldo Sousa, Ioannis Karaouzas, Stamatis Zogaris, Elsa Froufe, Manuel Lopes-Lima
The complete mitochondrial genome of Potomida acarnanica (Kobelt, 1879). Mitochondrial DNA. Part B, Resources 9 (6) (2024)
André Gomes-Dos-Santos, Elza Fonseca, Nicoletta Riccardi, Mariana Hinzmann, Manuel Lopes-Lima, Elsa Froufe
The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825. Scientific data 11 (1) (2024)
André Gomes-Dos-Santos, Elza Fonseca, Nicoletta Riccardi, Mariana Hinzmann, Manuel Lopes-Lima, Elsa Froufe
The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825. Scientific data 11 (1) (2024)
Giulia Secci-Petretto, Steven J Weiss, André Gomes-Dos-Santos, Henri Persat, André M Machado, Inês Vasconcelos, Luís Filipe C Castro, Elsa Froufe
A multi-tissue de novo transcriptome assembly and relative gene expression of the vulnerable freshwater salmonid Thymallus ligericus. Genetica 152 (2-3) (2024)
André Gomes-Dos-Santos, Elza Fonseca, Nicoletta Riccardi, Mariana Hinzmann, Manuel Lopes-Lima, Elsa Froufe
The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825. Scientific data 11 (1) (2024)
Giulia Secci-Petretto, Steven J Weiss, André Gomes-Dos-Santos, Henri Persat, André M Machado, Inês Vasconcelos, Luís Filipe C Castro, Elsa Froufe
A multi-tissue de novo transcriptome assembly and relative gene expression of the vulnerable freshwater salmonid Thymallus ligericus. Genetica 152 (2-3) (2024)
Ana Matos, Nair Vilas-Arrondo, André Gomes-Dos-Santos, Ana Veríssimo, Esther Román-Marcote, Francisco Baldó, Jaime Moreno-Aguilar, Montse Pérez, Manuel Lopes-Lima, Elsa Froufe, Luís Filipe C Castro
The complete mitogenome of the Atlantic longnose chimaera Rhinochimaera atlantica (Holt & Byrne, 1909). Mitochondrial DNA. Part B, Resources 9 (7) (2024)
André Gomes-Dos-Santos, Elza Fonseca, Nicoletta Riccardi, Mariana Hinzmann, Manuel Lopes-Lima, Elsa Froufe
The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825. Scientific data 11 (1) (2024)
Giulia Secci-Petretto, Steven J Weiss, André Gomes-Dos-Santos, Henri Persat, André M Machado, Inês Vasconcelos, Luís Filipe C Castro, Elsa Froufe
A multi-tissue de novo transcriptome assembly and relative gene expression of the vulnerable freshwater salmonid Thymallus ligericus. Genetica 152 (2-3) (2024)
Ana Matos, Nair Vilas-Arrondo, André Gomes-Dos-Santos, Ana Veríssimo, Esther Román-Marcote, Francisco Baldó, Jaime Moreno-Aguilar, Montse Pérez, Manuel Lopes-Lima, Elsa Froufe, Luís Filipe C Castro
The complete mitogenome of the Atlantic longnose chimaera Rhinochimaera atlantica (Holt & Byrne, 1909). Mitochondrial DNA. Part B, Resources 9 (7) (2024)
Giulia Secci-Petretto, Steven J Weiss, André Gomes-Dos-Santos, Henri Persat, André M Machado, Inês Vasconcelos, Luís Filipe C Castro, Elsa Froufe
A multi-tissue de novo transcriptome assembly and relative gene expression of the vulnerable freshwater salmonid Thymallus ligericus. Genetica (2024)
André Gomes-Dos-Santos, Manuel Lopes-Lima, André M Machado, Thomas Forest, Guillaume Achaz, Amílcar Teixeira, Vincent Prié, Luís Filipe C Castro, Elsa Froufe
The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758). GigaByte (Hong Kong, China) 2023 (2023)
Alberto Ribes-Navarro, Naoki Kabeya, Luís Filipe C Castro, André Gomes-Dos-Santos, Miguel M Fonseca, Hilke Alberts-Hubatsch, Francisco Hontoria, Juan Carlos Navarro, Oscar Monroig
Examination of gammarid transcriptomes reveals a widespread occurrence of key metabolic genes from epibiont bdelloid rotifers in freshwater species. Open biology 13 (10) (2023)
André Gomes-Dos-Santos, Manuel Lopes-Lima, André M Machado, Thomas Forest, Guillaume Achaz, Amílcar Teixeira, Vincent Prié, Luís Filipe C Castro, Elsa Froufe
The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758). GigaByte (Hong Kong, China) 2023 (2023)
André Gomes-Dos-Santos, Nair Vilas-Arrondo, André M Machado, Esther Román-Marcote, Jose Luís Del Río Iglesias, Francisco Baldó, Montse Pérez, Miguel M Fonseca, Luís Filipe C Castro, Elsa Froufe
Mitochondrial replication's role in vertebrate mtDNA strand asymmetry. Open biology 13 (12) (2023)
André Gomes-Dos-Santos, Elsa Froufe, John M Pfeiffer, Nathan A Johnson, Chase H Smith, André M Machado, Luís Filipe C Castro, Van Tu Do, Akimasa Hattori, Nicole Garrison, Nathan V Whelan, Ivan N Bolotov, Ilya V Vikhrev, Alexander V Kondakov, Mohamed Ghamizi, Vincent Prié, Arthur E Bogan, Manuel Lopes-Lima
A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida). Molecular ecology resources (2023)
André Gomes-Dos-Santos, Elsa Froufe, John M Pfeiffer, Nathan A Johnson, Chase H Smith, André M Machado, Luís Filipe C Castro, Van Tu Do, Akimasa Hattori, Nicole Garrison, Nathan V Whelan, Ivan N Bolotov, Ilya V Vikhrev, Alexander V Kondakov, Mohamed Ghamizi, Vincent Prié, Arthur E Bogan, Manuel Lopes-Lima
A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida). Molecular ecology resources (2023)
André Gomes-Dos-Santos, Elsa Froufe, André M Machado, Jasna Lajtner, Ján Černecký, L Filipe C Castro, Manuel Lopes Lima
A PacBio Hi-Fi genome assembly of the Painter's Mussel Unio pictorum (Linnaeus, 1758). Genome biology and evolution (2023)
André Gomes-Dos-Santos, Elsa Froufe, John M Pfeiffer, Nathan A Johnson, Chase H Smith, André M Machado, Luís Filipe C Castro, Van Tu Do, Akimasa Hattori, Nicole Garrison, Nathan V Whelan, Ivan N Bolotov, Ilya V Vikhrev, Alexander V Kondakov, Mohamed Ghamizi, Vincent Prié, Arthur E Bogan, Manuel Lopes-Lima
A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida). Molecular ecology resources (2023)
André Gomes-Dos-Santos, Nair Vilas-Arrondo, André M Machado, Esther Román-Marcote, Jose Luís Del Río Iglesias, Francisco Baldó, Montse Pérez, Miguel M Fonseca, Luís Filipe C Castro, Elsa Froufe
Mitochondrial replication's role in vertebrate mtDNA strand asymmetry. Open biology 13 (12) (2023)
André Gomes-Dos-Santos, Nair Vilas-Arrondo, André M Machado, Esther Román-Marcote, Jose Luís Del Río Iglesias, Francisco Baldó, Montse Pérez, Miguel M Fonseca, Luís Filipe C Castro, Elsa Froufe
Mitochondrial replication's role in vertebrate mtDNA strand asymmetry. Open biology 13 (12) (2023)
André Gomes-Dos-Santos, Manuel Lopes-Lima, André M Machado, Amílcar Teixeira, L Filipe C Castro, Elsa Froufe
PacBio Hi-Fi genome assembly of the Iberian dolphin freshwater mussel Unio delphinus Spengler, 1793. Scientific data 10 (1) (2023)
André M Machado, André Gomes-Dos-Santos, Miguel M Fonseca, Rute R da Fonseca, Ana Veríssimo, Mónica Felício, Ricardo Capela, Nelson Alves, Miguel Machado Santos, Filipe Salvador-Caramelo, Marcos Domingues, Raquel Ruivo, Elsa Froufe, Luís Filipe C Castro
A genome assembly of the Atlantic chub mackerel ( Scomber colias ): a valuable teleost fishing resource. GigaByte (Hong Kong, China) 2022 (2022)
André M Machado, André Gomes-Dos-Santos, Miguel M Fonseca, Rute R da Fonseca, Ana Veríssimo, Mónica Felício, Ricardo Capela, Nelson Alves, Miguel Machado Santos, Filipe Salvador-Caramelo, Marcos Domingues, Raquel Ruivo, Elsa Froufe, Luís Filipe C Castro
A genome assembly of the Atlantic chub mackerel ( Scomber colias ): a valuable teleost fishing resource. GigaByte (Hong Kong, China) 2022 (2022)
André Gomes-Dos-Santos, André M Machado, L Filipe C Castro, Vincent Prié, Amílcar Teixeira, Manuel Lopes-Lima, Elsa Froufe
The gill transcriptome of threatened European freshwater mussels. Scientific data 9 (1) (2022)
Nair Vilas-Arrondo, André Gomes-Dos-Santos, Montse Pérez, Francisco Baldó, Ana Veríssimo, Diana Catarino, André M Machado, Esther Román-Marcote, Rafael Bañón, Elsa Froufe, L Filipe C Castro
A mitochondrial genome assembly of the opal chimaera, Chimaera opalescens Luchetti, Iglésias et Sellos 2011, using PacBio HiFi long reads. Mitochondrial DNA. Part B, Resources 7 (3) (2022)
André Gomes-Dos-Santos, Manuel Lopes-Lima, André M Machado, António Marcos Ramos, Ana Usié, Ivan N Bolotov, Ilya V Vikhrev, Sophie Breton, L Filipe C Castro, Rute R da Fonseca, Juergen P Geist, Martin E Österling, Vincent Prié, Amílcar Teixeira, Han Ming Gan, Oleg Simakov, Elsa Froufe
The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758). DNA research : an international journal for rapid publication of reports on genes and genomes 28 (2) (2021)
André Gomes-Dos-Santos, Andreas Hagemann, Luísa Valente, Arne M Malzahn, Óscar Monroig, Elsa Froufe, L Filipe C Castro
Complete mitochondrial genome of the ragworm annelid Hediste diversicolor (of Müller, 1776) (Annelida: Nereididae). Mitochondrial DNA. Part B, Resources 6 (10) (2021)
André Gomes-Dos-Santos, André M Machado, Sofia Graça Aranha, Ester Dias, Ana Veríssimo, L Filipe C Castro, Elsa Froufe
The complete mitochondrial genome of the endemic Iberian pygmy skate Neoraja iberica Stehmann, Séret, Costa, & Baro 2008 (Elasmobranchii, Rajidae). Mitochondrial DNA. Part B, Resources 6 (3) (2021)
André Gomes-Dos-Santos, Nair Vilas-Arrondo, André M Machado, Ana Veríssimo, Montse Pérez, Francisco Baldó, L Filipe C Castro, Elsa Froufe
Shedding light on the Chimaeridae taxonomy: the complete mitochondrial genome of the cartilaginous fish Hydrolagus mirabilis (Collett, 1904) (Holocephali: Chimaeridae). Mitochondrial DNA. Part B, Resources 6 (2) (2021)
Nair Vilas Arrondo, André Gomes-Dos-Santos, Esther Román Marcote, Montse Pérez, Elsa Froufe, Luís Filipe C Castro
A new gene order in the mitochondrial genome of the deep-sea diaphanous hatchet fish Sternoptyx diaphana Hermann, 1781 (Stomiiformes: Sternoptychidae). Mitochondrial DNA. Part B, Resources 5 (3) (2020)