Carl Kingsford

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 8

Top Topics

Convolutional Neural Network

Single Molecule

High Throughput Sequencing

Top Venues

Algorithms for molecular biology : AMB

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Haotian Teng, Marcus Stoiber, Ziv Bar-Joseph, Carl Kingsford
Detecting m6A RNA modification from nanopore sequencing using a semi-supervised learning framework. bioRxiv : the preprint server for biology (2024)
Haotian Teng, Marcus Stoiber, Ziv Bar-Joseph, Carl Kingsford
Detecting m6A RNA modification from nanopore sequencing using a semi-supervised learning framework. bioRxiv : the preprint server for biology (2024)
Yihang Shen, Lingge Yu, Yutong Qiu, Tianyu Zhang, Carl Kingsford
Improving Hi-C contact matrices using genome graphs. bioRxiv : the preprint server for biology (2023)
Cong Ma, Hongyu Zheng, Carl Kingsford
Exact transcript quantification over splice graphs. Algorithms for molecular biology : AMB 16 (1) (2021)
Prashant Pandey, Yinjie Gao, Carl Kingsford
VariantStore: an index for large-scale genomic variant search. Genome biology 22 (1) (2021)
Yutong Qiu, Cong Ma, Han Xie, Carl Kingsford
Detecting transcriptomic structural variants in heterogeneous contexts via the Multiple Compatible Arrangements Problem. Algorithms for molecular biology : AMB 15 (2020)
Hongyi Xin, Mingfu Shao, Carl Kingsford
Context-aware seeds for read mapping. Algorithms for molecular biology : AMB 15 (2020)
Laura H Tung, Mingfu Shao, Carl Kingsford
Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long reads. Genome biology 20 (1) (2019)