Dong Li

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 13

Top Venues

Nucleic acids research

Briefings in bioinformatics

Nature communications

International journal of radiation biology

Peking University (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Peking University Sep 01 2001 - Jul 01 2006

China

PHD :: CCME

Peking University Sep 01 1997 - Jul 01 2001

China

BSC :: CCME

Publications

Yuan Liu, Dianke Li, Xin Zhang, Simin Xia, Yingjie Qu, Xinping Ling, Yang Li, Xiangren Kong, Lingqiang Zhang, Chun-Ping Cui, Dong Li
A protein sequence-based deep transfer learning framework for identifying human proteome-wide deubiquitinase-substrate interactions. Nature communications 15 (1) (2024)
Yuan Liu, Dianke Li, Xin Zhang, Simin Xia, Yingjie Qu, Xinping Ling, Yang Li, Xiangren Kong, Lingqiang Zhang, Chun-Ping Cui, Dong Li
A protein sequence-based deep transfer learning framework for identifying human proteome-wide deubiquitinase-substrate interactions. Nature communications 15 (1) (2024)
Peng Jiang, Zuzhen Zhang, Qing Yu, Ze Wang, Lihong Diao, Dong Li
ToxDAR: A Workflow Software for Analyzing Toxicologically Relevant Proteomic and Transcriptomic Data, from Data Preparation to Toxicological Mechanism Elucidation. International journal of molecular sciences 25 (17) (2024)
Xiangren Kong, Lihong Diao, Peng Jiang, Shiyan Nie, Shuzhen Guo, Dong Li
DDK-Linker: a network-based strategy identifies disease signals by linking high-throughput omics datasets to disease knowledge. Briefings in bioinformatics 25 (2) (2024)
Simin Xia, Dianke Li, Xinru Deng, Zhongyang Liu, Huaqing Zhu, Yuan Liu, Dong Li
Integration of protein sequence and protein-protein interaction data by hypergraph learning to identify novel protein complexes. Briefings in bioinformatics 25 (4) (2024)
Simin Xia, Dianke Li, Xinru Deng, Zhongyang Liu, Huaqing Zhu, Yuan Liu, Dong Li
Integration of protein sequence and protein-protein interaction data by hypergraph learning to identify novel protein complexes. Briefings in bioinformatics 25 (4) (2024)
Yuan Liu, Dianke Li, Xin Zhang, Simin Xia, Yingjie Qu, Xinping Ling, Yang Li, Xiangren Kong, Lingqiang Zhang, Chun-Ping Cui, Dong Li
A protein sequence-based deep transfer learning framework for identifying human proteome-wide deubiquitinase-substrate interactions. Nature communications 15 (1) (2024)
Zhongyang Liu, Ruzhen Chen, Lele Yang, Jianzhou Jiang, Shurui Ma, Lanhui Chen, Mengqi He, Yichao Mao, Congcong Guo, Xiangya Kong, Xinlei Zhang, Yaning Qi, Fengsong Liu, Fuchu He, Dong Li
CDS-DB, an omnibus for patient-derived gene expression signatures induced by cancer treatment. Nucleic acids research (2023)
Xiangren Kong, Chao Liu, Zuzhen Zhang, Meiqi Cheng, Zhijun Mei, Xiangdong Li, Peng Liu, Lihong Diao, Yajie Ma, Peng Jiang, Xiangya Kong, Shiyan Nie, Yingzi Guo, Ze Wang, Xinlei Zhang, Yan Wang, Liujun Tang, Shuzhen Guo, Zhongyang Liu, Dong Li
BATMAN-TCM 2.0: an enhanced integrative database for known and predicted interactions between traditional Chinese medicine ingredients and target proteins. Nucleic acids research (2023)
Zhongyang Liu, Jiale Liu, Xinyue Liu, Xun Wang, Qiaosheng Xie, Xinlei Zhang, Xiangya Kong, Mengqi He, Yuting Yang, Xinru Deng, Lele Yang, Yaning Qi, Jiajun Li, Yuan Liu, Liying Yuan, Lihong Diao, Fuchu He, Dong Li
CTR-DB, an omnibus for patient-derived gene expression signatures correlated with cancer drug response. Nucleic acids research (2021)
Xun Wang, Yang Li, Mengqi He, Xiangren Kong, Peng Jiang, Xi Liu, Lihong Diao, Xinlei Zhang, Honglei Li, Xinping Ling, Simin Xia, Zhongyang Liu, Yuan Liu, Chun-Ping Cui, Yan Wang, Liujun Tang, Lingqiang Zhang, Fuchu He, Dong Li
UbiBrowser 2.0: a comprehensive resource for proteome-wide known and predicted ubiquitin ligase/deubiquitinase-substrate interactions in eukaryotic species. Nucleic acids research (2021)
Hao Xu, Yuan Liu, Yang Li, Lihong Diao, Ziyu Xun, Yuqi Zhang, Zhidong Wang, Dong Li
RadAtlas 1.0: a knowledgebase focusing on radiation-associated genes. International journal of radiation biology 96 (8) (2020)
Jinying Liu, Dezhi Sun, Jiale Liu, Hao Xu, Yuan Liu, Yang Li, Lihong Diao, Xun Wang, Dan Wang, Lei Tian, Huimin Zhang, Zhongyang Liu, Weiquan Ren, Fuchu He, Dong Li, Shu-Zhen Guo
FibroAtlas: A Database for the Exploration of Fibrotic Diseases and Their Genes. Cardiology research and practice 2019 (2019)

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Publication Activity (10 Years)

Top Topics

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Dong Li