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Duygu Ucar

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 15

Top Venues

Nature communications

Aging cell

Scientific reports

Nature medicine

Jackson Laboratory - Farmington

Ohio State University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Jackson Laboratory - Farmington Oct 1o 2019

United States

Associate Professor

Education History

Ohio State University Sep 1o 2003 - Aug 1o 2009

United States

PHD :: Computer Science

Publications

Emin Onur Karakaslar, Neerja Katiyar, Muneer Hasham, Ahrim Youn, Siddhartha Sharma, Cheng-Han Chung, Radu Marches, Ron Korstanje, Jacques F Banchereau, Duygu Ucar
Transcriptional activation of Jun and Fos members of the AP-1 complex is a conserved signature of immune aging that contributes to inflammaging. Aging cell (2023)
Brittany Lynn Angarola, Siddhartha Sharma, Neerja Katiyar, Hyeon Gu Kang, Djamel Nehar-Belaid, SungHee Park, Rachel Gott, Giray N Eryilmaz, Mark A LaBarge, Karolina Palucka, Jeffrey H Chuang, Ron Korstanje, Duygu Ucar, Olga Anczukow
Comprehensive single cell aging atlas of mammary tissues reveals shared epigenomic and transcriptomic signatures of aging and cancer. bioRxiv : the preprint server for biology (2023)
Emin Onur Karakaslar, Neerja Katiyar, Muneer Hasham, Ahrim Youn, Siddhartha Sharma, Cheng-Han Chung, Radu Marches, Ron Korstanje, Jacques F Banchereau, Duygu Ucar
Transcriptional activation of Jun and Fos members of the AP-1 complex is a conserved signature of immune aging that contributes to inflammaging. Aging cell (2023)
Emin Onur Karakaslar, Neerja Katiyar, Muneer Hasham, Ahrim Youn, Siddhartha Sharma, Cheng-Han Chung, Radu Marches, Ron Korstanje, Jacques F Banchereau, Duygu Ucar
Transcriptional activation of Jun and Fos members of the AP-1 complex is a conserved signature of immune aging that contributes to inflammaging. Aging cell (2023)
Shubham Khetan, Susan Kales, Romy Kursawe, Alexandria Jillette, Jacob C Ulirsch, Steven K Reilly, Duygu Ucar, Ryan Tewhey, Michael L Stitzel
Functional characterization of T2D-associated SNP effects on baseline and ER stress-responsive β cell transcriptional activation. Nature communications 12 (1) (2021)
Asa Thibodeau, Alper Eroglu, Christopher S McGinnis, Nathan Lawlor, Djamel Nehar-Belaid, Romy Kursawe, Radu Marches, Daniel N Conrad, George A Kuchel, Zev J Gartner, Jacques Banchereau, Michael L Stitzel, A Ercument Cicek, Duygu Ucar
AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data. Genome biology 22 (1) (2021)
Asa Thibodeau, Shubham Khetan, Alper Eroglu, Ryan Tewhey, Michael L Stitzel, Duygu Ucar
CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data. PLoS computational biology 17 (12) (2021)
Branca I Pereira, Roel P H De Maeyer, Luciana Polaco Covre, Djamel Nehar-Belaid, Alessio Lanna, Sophie Ward, Radu Marches, Emma S Chambers, Daniel C O Gomes, Natalie E Riddell, Mala K Maini, Vitor H Teixeira, Samuel M Janes, Derek W Gilroy, Anis Larbi, Neil A Mabbott, Duygu Ucar, George A Kuchel, Sian M Henson, Jessica Strid, Jun Hee Lee, Jacques F Banchereau, Arne N Akbar
Sestrins induce natural killer function in senescent-like CD8+ T cells. Nature immunology 21 (6) (2020)
Eladio J Márquez, Cheng-Han Chung, Radu Marches, Robert J Rossi, Djamel Nehar-Belaid, Alper Eroglu, David J Mellert, George A Kuchel, Jacques F Banchereau, Duygu Ucar
Sexual-dimorphism in human immune system aging. Nature communications 11 (1) (2020)
Asa Thibodeau, Asli Uyar, Shubham Khetan, Michael L Stitzel, Duygu Ucar
A neural network based model effectively predicts enhancers from clinical ATAC-seq samples. Scientific reports 8 (1) (2018)
Arushi Varshney, Hadley VanRenterghem, Peter Orchard, Alan P Boyle, Michael L Stitzel, Duygu Ucar, Stephen C J Parker
Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression. Genetics 211 (2) (2018)
Simone Caielli, Diogo Troggian Veiga, Preetha Balasubramanian, Shruti Athale, Bojana Domic, Elise Murat, Romain Banchereau, Zhaohui Xu, Manjari Chandra, Cheng-Han Chung, Lynnette Walters, Jeanine Baisch, Tracey Wright, Marilynn Punaro, Lorien Nassi, Katie Stewart, Julie Fuller, Duygu Ucar, Hideki Ueno, Joseph Zhou, Jacques F Banchereau, Virginia M Pascual
A CD4+ T cell population expanded in lupus blood provides B cell help through interleukin-10 and succinate. Nature medicine 25 (1) (2018)
Donghyung Lee, Anthony Cheng, Nathan Lawlor, Mohan Bolisetty, Duygu Ucar
Detection of correlated hidden factors from single cell transcriptomes using Iteratively Adjusted-SVA (IA-SVA). Scientific reports 8 (1) (2018)
Duygu Ucar, Eladio J Márquez, Cheng-Han Chung, Radu Marches, Robert J Rossi, Asli Uyar, Te-Chia Wu, Joshy George, Michael L Stitzel, A Karolina Palucka, George A Kuchel, Jacques F Banchereau
The chromatin accessibility signature of human immune aging stems from CD8+ T cells. The Journal of experimental medicine 214 (10) (2017)
Joshy George, Asli Uyar, Kira Young, Lauren Kuffler, Kaiden Waldron-Francis, Eladio J Márquez, Duygu Ucar, Jennifer J Trowbridge
Leukaemia cell of origin identified by chromatin landscape of bulk tumour cells. Nature communications 7 (2016)

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Publication Activity (10 Years)

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Duygu Ucar