Fatemeh Vafaee

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 29

Top Venues

Cancers

International journal of molecular sciences

Scientific reports

Briefings in bioinformatics

University of New South Wales

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of New South Wales May 01 2017

Australia

Senior Lecturer :: Biotechnology and Biomolecular Sciences

Publications

Seid Miad Zandavi, Christy Kim, Thomas Goodwin, Cynthuja Thilakanathan, Maryam Bostanara, Anna Camille Akon, Daniel Al Mouiee, Sasha Barisic, Ammar Majeed, William W Kemp, Francis Chu, Marty Smith, Kate L Collins, Vincent Wai-Sun Wong, Grace Lai-Hung Wong, Jason Behary, Stuart Keith Roberts, Kelvin Kwok-Chai Ng, Fatemeh Vafaee, Amany Zekry
AI-powered prediction of HCC recurrence after surgical resection: Personalised intervention opportunities using patient-specific risk factors. Liver international : official journal of the International Association for the Study of the Liver (2024)
Abir Khazaal, Seid Miad Zandavi, Andrei Smolnikov, Shadma Fatima, Fatemeh Vafaee
Pan-Cancer Analysis Reveals Functional Similarity of Three lncRNAs across Multiple Tumors. International journal of molecular sciences 24 (5) (2023)
Abir Khazaal, Seid Miad Zandavi, Andrei Smolnikov, Shadma Fatima, Fatemeh Vafaee
Pan-Cancer Analysis Reveals Functional Similarity of Three lncRNAs across Multiple Tumors. International journal of molecular sciences 24 (5) (2023)
Tamkin Ahmadzada, Abhishek Vijayan, Fatemeh Vafaee, Ali Azimi, Glen Reid, Stephen John Clarke, Steven Kao, Georges Emile Raymond Grau, Elham Hosseini-Beheshti
Small and Large Extracellular Vesicles Derived from Pleural Mesothelioma Cell Lines Offer Biomarker Potential. Cancers 15 (8) (2023)
Fatemeh Safari, Cheka Kehelpannala, Azadeh Safarchi, Amani M Batarseh, Fatemeh Vafaee
Biomarker Reproducibility Challenge: A Review of Non-Nucleotide Biomarker Discovery Protocols from Body Fluids in Breast Cancer Diagnosis. Cancers 15 (10) (2023)
Ankita Mandal, Siddhaant Priyam, Hsien Herbert Chan, Bruna Melhoranse Gouveia, Pascale Guitera, Yang Song, Matthew Arthur Barrington Baker, Fatemeh Vafaee
Computer-Aided Diagnosis of Melanoma Subtypes Using Reflectance Confocal Images. Cancers 15 (5) (2023)
Tamkin Ahmadzada, Abhishek Vijayan, Fatemeh Vafaee, Ali Azimi, Glen Reid, Stephen John Clarke, Steven Kao, Georges Emile Raymond Grau, Elham Hosseini-Beheshti
Small and Large Extracellular Vesicles Derived from Pleural Mesothelioma Cell Lines Offer Biomarker Potential. Cancers 15 (8) (2023)
Shruthi Subramanian, Julie A I Thoms, Yizhou Huang, Carina Paola Cornejo Paramo, Forrest Charles Koch, Sebastien Jacquelin, Sylvie Shen, Emma Song, Swapna Joshi, Christopher Peter Brownlee, Petter S Woll, Diego Chacon-Fajardo, Dominik Beck, David J Curtis, Kenneth Yehson, Vicki Antonenas, Tracey A O'Brien, Annette Trickett, Jason A Powell, Ian D Lewis, Stuart M Pitson, Maher K Gandhi, Steven W Lane, Fatemeh Vafaee, Emily S Wong, Berthold Gottgens, Hamid Rokny, Jason Wing Hon Wong, John E Pimanda
Genome-wide Transcription Factor binding maps reveal cell-specific changes in the regulatory architecture of human HSPC. Blood (2023)
Abir Khazaal, Seid Miad Zandavi, Andrei Smolnikov, Shadma Fatima, Fatemeh Vafaee
Pan-Cancer Analysis Reveals Functional Similarity of Three lncRNAs across Multiple Tumors. International journal of molecular sciences 24 (5) (2023)
Ankita Mandal, Siddhaant Priyam, Hsien Herbert Chan, Bruna Melhoranse Gouveia, Pascale Guitera, Yang Song, Matthew Arthur Barrington Baker, Fatemeh Vafaee
Computer-Aided Diagnosis of Melanoma Subtypes Using Reflectance Confocal Images. Cancers 15 (5) (2023)
Julie A I Thoms, Forrest Charles Koch, Alireza Raei, Shruthi Subramanian, Jason Wing Hon Wong, Fatemeh Vafaee, John E Pimanda
BloodChIP Xtra: an expanded database of comparative genome-wide transcription factor binding and gene-expression profiles in healthy human stem/progenitor subsets and leukemic cells. Nucleic acids research (2023)
Amani M Batarseh, Fatemeh Vafaee, Elham Hosseini-Beheshti, Azadeh Safarchi, Alex Chen, Amy Cohen, Annette Juillard, Nicholas Henry Hunt, Michael Mariani, Todd Mitchell, Georges Emile Raymond Grau
Investigation of Plasma-Derived Lipidome Profiles in Experimental Cerebral Malaria in a Mouse Model Study. International journal of molecular sciences 24 (1) (2022)
Shadma Fatima, Yafeng Ma, Azadeh Safrachi, Sana Haider, Kevin J Spring, Fatemeh Vafaee, Kieran Francis Scott, Tara Laurine Roberts, Therese Maria Becker, Paul de Souza
Harnessing Liquid Biopsies to Guide Immune Checkpoint Inhibitor Therapy. Cancers 14 (7) (2022)
Amani M Batarseh, Fatemeh Vafaee, Elham Hosseini-Beheshti, Azadeh Safarchi, Alex Chen, Amy Cohen, Annette Juillard, Nicholas Henry Hunt, Michael Mariani, Todd Mitchell, Georges Emile Raymond Grau
Investigation of Plasma-Derived Lipidome Profiles in Experimental Cerebral Malaria in a Mouse Model Study. International journal of molecular sciences 24 (1) (2022)
Forrest Charles Koch, Gavin J Sutton, Irina Voineagu, Fatemeh Vafaee
Supervised application of internal validation measures to benchmark dimensionality reduction methods in scRNA-seq data. Briefings in bioinformatics 22 (6) (2022)
Amani M Batarseh, Fatemeh Vafaee, Elham Hosseini-Beheshti, Azadeh Safarchi, Alex Chen, Amy Cohen, Annette Juillard, Nicholas Henry Hunt, Michael Mariani, Todd Mitchell, Georges Emile Raymond Grau
Investigation of Plasma-Derived Lipidome Profiles in Experimental Cerebral Malaria in a Mouse Model Study. International journal of molecular sciences 24 (1) (2022)
Seid Miad Zandavi, Forrest Charles Koch, Abhishek Vijayan, Fabio Zanini, Fatima Valdes Mora, David Gallego Ortega, Fatemeh Vafaee
Disentangling single-cell omics representation with a power spectral density-based feature extraction. Nucleic acids research 50 (10) (2022)
Abhishek Vijayan, Shadma Fatima, Arcot Sowmya, Fatemeh Vafaee
Blood-based transcriptomic signature panel identification for cancer diagnosis: benchmarking of feature extraction methods. Briefings in bioinformatics 23 (5) (2022)
A K M Azad, Mojdeh Dinarvand, Alireza Nematollahi, Joshua Swift, Louise Lutze-Mann, Fatemeh Vafaee
A comprehensive integrated drug similarity resource for in-silico drug repositioning and beyond. Briefings in bioinformatics 22 (3) (2021)
Azadeh Safarchi, Shadma Fatima, Zahra Ayati, Fatemeh Vafaee
An update on novel approaches for diagnosis and treatment of SARS-CoV-2 infection. Cell & bioscience 11 (1) (2021)
Masroor Bayati, Hamid R Rabiee, Mehrdad Mehrbod, Fatemeh Vafaee, Diako Ebrahimi, Alistair R R Forrest, Hamid Alinejad-Rokny
CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes. Scientific reports 10 (1) (2020)
Emily K Colvin, Viive M Howell, Samuel C Mok, Goli Samimi, Fatemeh Vafaee
Expression of long noncoding RNAs in cancer-associated fibroblasts linked to patient survival in ovarian cancer. Cancer science 111 (5) (2020)
Saeideh Ebrahimkhani, Heidi N Beadnall, Chenyu Wang, Catherine M Suter, Michael H Barnett, Michael E Buckland, Fatemeh Vafaee
Serum Exosome MicroRNAs Predict Multiple Sclerosis Disease Activity after Fingolimod Treatment. Molecular neurobiology 57 (2) (2019)
Zhiduan Su, James G Burchfield, Pengyi Yang, Sean J Humphrey, Guang Yang, Deanne Francis, Sabina Yasmin, Sung-Young Shin, Dougall M Norris, Alison L Kearney, Miro A Astore, Jonathan Scavuzzo, Kelsey H Fisher-Wellman, Qiao-Ping Wang, Benjamin L Parker, G Gregory Neely, Fatemeh Vafaee, Joyce Chiu, Reichelle Yeo, Philip J Hogg, Daniel J Fazakerley, Lan K Nguyen, Serdar Kuyucak, David E James
Global redox proteome and phosphoproteome analysis reveals redox switch in Akt. Nature communications 10 (1) (2019)
Fatemeh Vafaee, Connie Diakos, Michaela B Kirschner, Glen Reid, Michael Z Michael, Lisa G Horvath, Hamid Alinejad-Rokny, Zhangkai Jason Cheng, Zdenka Kuncic, Stephen Clarke
A data-driven, knowledge-based approach to biomarker discovery: application to circulating microRNA markers of colorectal cancer prognosis. NPJ systems biology and applications 4 (2018)
Rima Chaudhuri, James R Krycer, Daniel J Fazakerley, Kelsey H Fisher-Wellman, Zhiduan Su, Kyle Lee Hoehn, Jean Yee Hwa Yang, Zdenka Kuncic, Fatemeh Vafaee, David E James
The transcriptional response to oxidative stress is part of, but not sufficient for, insulin resistance in adipocytes. Scientific reports 8 (1) (2018)
Saeideh Ebrahimkhani, Fatemeh Vafaee, Susannah Hallal, Heng Wei, Maggie Yuk T Lee, Paul E Young, Laveniya Satgunaseelan, Heidi Beadnall, Michael H Barnett, Brindha Shivalingam, Catherine M Suter, Michael E Buckland, Kimberley Louise Alexander-Kaufman
Deep sequencing of circulating exosomal microRNA allows non-invasive glioblastoma diagnosis. NPJ precision oncology 2 (2018)
Saeideh Ebrahimkhani, Fatemeh Vafaee, Paul E Young, Suzy S J Hur, Simon Hawke, Emma Devenney, Heidi Beadnall, Michael H Barnett, Catherine M Suter, Michael E Buckland
Exosomal microRNA signatures in multiple sclerosis reflect disease status. Scientific reports 7 (1) (2017)
Fatemeh Vafaee, James R Krycer, Xiuquan Ma, Timur Burykin, David E James, Zdenka Kuncic
ORTI: An Open-Access Repository of Transcriptional Interactions for Interrogating Mammalian Gene Expression Data. PloS one 11 (10) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Fatemeh Vafaee