Filip Yabukarski

Publication Activity (10 Years)

Years Active: 2020-2023
Publications (10 Years): 11

Top Topics

Molecular Dynamics

Convolutional Neural Network

Crystal Structure

Electronic Health Record

Top Venues

Acta crystallographica. Section D, Structural biology

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Tzanko I Doukov, Daniel Herschlag, Filip Yabukarski
Obtaining anomalous and ensemble information from protein crystals from 220 K up to physiological temperatures. Acta crystallographica. Section D, Structural biology 79 (Pt 3) (2023)
Siyuan Du, Stephanie A Wankowicz, Filip Yabukarski, Tzanko I Doukov, Daniel Herschlag, Brian K Shoichet
Refinement of Multiconformer Ensemble Models from Multi-temperature X-ray Diffraction Data. bioRxiv : the preprint server for biology (2023)
Tzanko I Doukov, Daniel Herschlag, Filip Yabukarski
Obtaining anomalous and ensemble information from protein crystals from 220 K up to physiological temperatures. Acta crystallographica. Section D, Structural biology 79 (Pt 3) (2023)
Siyuan Du, Stephanie A Wankowicz, Filip Yabukarski, Tzanko I Doukov, Daniel Herschlag, Brian K Shoichet
Refinement of Multiconformer Ensemble Models from Multi-temperature X-ray Diffraction Data. bioRxiv : the preprint server for biology (2023)
Siyuan Du, Stephanie A Wankowicz, Filip Yabukarski, Tzanko I Doukov, Daniel Herschlag, Brian K Shoichet
Refinement of Multiconformer Ensemble Models from Multi-temperature X-ray Diffraction Data. bioRxiv : the preprint server for biology (2023)
Tzanko I Doukov, Daniel Herschlag, Filip Yabukarski
Obtaining anomalous and ensemble information from protein crystals from 220 K up to physiological temperatures. Acta crystallographica. Section D, Structural biology 79 (Pt 3) (2023)
Filip Yabukarski, Tzanko I Doukov, Daniel A Mokhtari, Siyuan Du, Daniel Herschlag
Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals. Acta crystallographica. Section D, Structural biology 78 (Pt 8) (2022)
Filip Yabukarski, Tzanko I Doukov, Margaux M Pinney, Justin T Biel, Brian K Shoichet, Daniel Herschlag
Ensemble-function relationships to dissect mechanisms of enzyme catalysis. Science advances 8 (41) (2022)
Margaux M Pinney, Daniel A Mokhtari, Eyal Akiva, Filip Yabukarski, David M Sanchez, Ruibin Liang, Tzanko I Doukov, Todd J Martinez, Patricia C Babbitt, Daniel Herschlag
Parallel molecular mechanisms for enzyme temperature adaptation. Science (New York, N.Y.) 371 (6533) (2021)
Filip Yabukarski, Justin T Biel, Margaux M Pinney, Tzanko I Doukov, Alexander S Powers, Brian K Shoichet, Daniel Herschlag
Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles. Proceedings of the National Academy of Sciences of the United States of America 117 (52) (2020)
Tzanko I Doukov, Daniel Herschlag, Filip Yabukarski
Instrumentation and experimental procedures for robust collection of X-ray diffraction data from protein crystals across physiological temperatures. Journal of applied crystallography 53 (Pt 6) (2020)