James J Davis

ORCID

Publication Activity (10 Years)

Years Active: 2021-2023
Publications (10 Years): 6

Top Venues

Microbiology spectrum

mSystems

Nucleic acids research

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Marcus Nguyen, Zachary Elmore, Clay Ihle, Francesco S Moen, Adam D Slater, Benjamin N Turner, Bruce Parrello, Aaron A Best, James J Davis
Predicting variable gene content in Escherichia coli using conserved genes. mSystems (2023)
Derya Aytan-Aktug, Philip Thomas Lanken Conradsen Clausen, Judit Szarvas, Patrick Munk, Saria Otani, Marcus Nguyen, James J Davis, Ole Lund, Frank Møller Aarestrup
PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest. mSystems 7 (2) (2022)
Maxim Zvyagin, Alexander Brace, Kyle Hippe, Yuntian Deng, Bin Zhang, Cindy Orozco Bohorquez, Austin Clyde, Bharat Kale, Danilo Perez-Rivera, Heng Ma, Carla M Mann, Michael Irvin, J Gregory Pauloski, Logan Ward, Valerie Hayot-Sasson, Murali Emani, Sam Foreman, Zhen Xie, Diangen Lin, Maulik Shukla, Weili Nie, Josh Romero, Christian Dallago, Arash Vahdat, Chaowei Xiao, Thomas Gibbs, Ian Foster, James J Davis, Michael E Papka, Thomas Brettin, Rick Stevens, Anima Anandkumar, Venkatram Vishwanath, Arvind Ramanathan
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics. bioRxiv : the preprint server for biology (2022)
Derya Aytan-Aktug, Vladislav Grigorjev, Judit Szarvas, Philip Thomas Lanken Conradsen Clausen, Patrick Munk, Marcus Nguyen, James J Davis, Frank Møller Aarestrup, Ole Lund
SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies. Microbiology spectrum (2022)
Robert D Olson, Rida Assaf, Thomas Brettin, Neal Conrad, Clark Cucinell, James J Davis, Donald M Dempsey, Alice R Wattam, Emily M Dietrich, Ronald W Kenyon, Mehmet Kuscuoglu, Elliot J Lefkowitz, Jian Lu, Dustin Machi, Catherine Macken, Chunhong Mao, Anna Niewiadomska, Marcus Nguyen, Gary J Olsen, Jamie C Overbeek, Bruce Parrello, Victoria Parrello, Jacob S Porter, Gordon D Pusch, Maulik Shukla, Indresh Singh, Lucy Stewart, Gene Tan, Chris Thomas, Margo VanOeffelen, Veronika Vonstein, Zachary S Wallace, Andrew S Warren, Alice R Wattam, Fangfang Xia, Hyunseung Yoo, Yun Zhang, Christian M Zmasek, Richard H Scheuermann, Rick L Stevens
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR. Nucleic acids research (2022)
James J Davis, Scott Wesley Long, Paul A Christensen, Randall J Olsen, Robert Olson, Maulik Shukla, Sishir Subedi, Rick Stevens, James M Musser
Analysis of the ARTIC Version 3 and Version 4 SARS-CoV-2 Primers and Their Impact on the Detection of the G142D Amino Acid Substitution in the Spike Protein. Microbiology spectrum (2021)

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Publication Activity (10 Years)

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James J Davis