James J De Yoreo (James J DeYoreo, J J De Yoreo, James De Yoreo)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 55

Top Topics

Molecular Dynamics Simulations

Binding Protein

High Efficiency

Atomic Force Microscopy

Top Venues

The journal of physical chemistry letters

Biomacromolecules

This page only lists publications with an associated author ORCID identifier.

Publications

Marlo Zorman, Christian Phillips, Chenyang Shi, Shuai Zhang, James J De Yoreo, Jim Pfaendtner
Thermodynamic Analysis of Silk Fibroin-Graphite Hybrid Materials and Their Morphology. The journal of physical chemistry. B (2024)
Sakshi Yadav Schmid, Xiang Ma, Joshua A Hammons, Sebastian T Mergelsberg, Bradley S Harris, Thomas Ferron, Wenchao Yang, Wenhao Zhou, Renyu Zheng, Shuai Zhang, Benjamin Adam Legg, Anthony Van Buuren, Marcel D Baer, Chun-Long Chen, Jinhui Tao, James J De Yoreo
Influence of Peptoid Sequence on the Mechanisms and Kinetics of 2D Assembly. ACS nano (2024)
Sakshi Yadav Schmid, Xiang Ma, Joshua A Hammons, Sebastian T Mergelsberg, Bradley S Harris, Thomas Ferron, Wenchao Yang, Wenhao Zhou, Renyu Zheng, Shuai Zhang, Benjamin Adam Legg, Anthony Van Buuren, Marcel D Baer, Chun-Long Chen, Jinhui Tao, James J De Yoreo
Influence of Peptoid Sequence on the Mechanisms and Kinetics of 2D Assembly. ACS nano 18 (4) (2024)
Sakshi Yadav Schmid, Xiang Ma, Joshua A Hammons, Sebastian T Mergelsberg, Bradley S Harris, Thomas Ferron, Wenchao Yang, Wenhao Zhou, Renyu Zheng, Shuai Zhang, Benjamin Adam Legg, Anthony Van Buuren, Marcel D Baer, Chun-Long Chen, Jinhui Tao, James J De Yoreo
Influence of Peptoid Sequence on the Mechanisms and Kinetics of 2D Assembly. ACS nano 18 (4) (2024)
Marlo Zorman, Christian Phillips, Chenyang Shi, Shuai Zhang, James J De Yoreo, Jim Pfaendtner
Thermodynamic Analysis of Silk Fibroin-Graphite Hybrid Materials and Their Morphology. The journal of physical chemistry. B 128 (10) (2024)
Sakshi Yadav Schmid, Xiang Ma, Joshua A Hammons, Sebastian T Mergelsberg, Bradley S Harris, Thomas Ferron, Wenchao Yang, Wenhao Zhou, Renyu Zheng, Shuai Zhang, Benjamin Adam Legg, Anthony Van Buuren, Marcel D Baer, Chun-Long Chen, Jinhui Tao, James J De Yoreo
Influence of Peptoid Sequence on the Mechanisms and Kinetics of 2D Assembly. ACS nano 18 (4) (2024)
Marlo Zorman, Christian Phillips, Chenyang Shi, Shuai Zhang, James J De Yoreo, Jim Pfaendtner
Thermodynamic Analysis of Silk Fibroin-Graphite Hybrid Materials and Their Morphology. The journal of physical chemistry. B 128 (10) (2024)
Sakshi Yadav Schmid, Xiang Ma, Joshua A Hammons, Sebastian T Mergelsberg, Bradley S Harris, Thomas Ferron, Wenchao Yang, Wenhao Zhou, Renyu Zheng, Shuai Zhang, Benjamin Adam Legg, Anthony Van Buuren, Marcel D Baer, Chun-Long Chen, Jinhui Tao, James J De Yoreo
Influence of Peptoid Sequence on the Mechanisms and Kinetics of 2D Assembly. ACS nano 18 (4) (2024)
Susrut Akkineni, Gregory S Doerk, Chenyang Shi, Biao Jin, Shuai Zhang, Stefan Habelitz, James J De Yoreo
Biomimetic Mineral Synthesis by Nanopatterned Supramolecular-Block Copolymer Templates. Nano letters (2023)
Lili Liu, Benjamin A Legg, William Smith, Lawrence M Anovitz, Xin Zhang, Reed Harper, Carolyn I Pearce, Kevin M Rosso, Andrew G Stack, Markus Bleuel, David F R Mildner, Gregory K Schenter, Aurora E Clark, James J De Yoreo, Jaehun Chun, Elias Nakouzi
Predicting Outcomes of Nanoparticle Attachment by Connecting Atomistic, Interfacial, Particle, and Aggregate Scales. ACS nano (2023)
Jose Leobardo Bañuelos, Eric Borguet, Gordon E Brown, Randall T Cygan, James J De Yoreo, Patricia M Dove, Marie-Pierre Gaigeot, Franz M Geiger, Julianne M Gibbs, Vicki H Grassian, Anastasia G Ilgen, Young-Shin Jun, Nadine J Kabengi, Lynn Katz, James D Kubicki, Johannes Lützenkirchen, Christine V Putnis, Richard C Remsing, Kevin M Rosso, Gernot Rother, Marialore Sulpizi, Mario Villalobos, Huichun Zhang
Oxide- and Silicate-Water Interfaces and Their Roles in Technology and the Environment. Chemical reviews (2023)
Brenna M Knight, Kevin J Edgar, James J De Yoreo, Patricia M Dove
Chitosan as a Canvas for Studies of Macromolecular Controls on CaCO 3 Biological Crystallization. Biomacromolecules (2023)
Mingfei Zhao, Shuai Zhang, Renyu Zheng, Sarah Alamdari, Christopher J Mundy, Jim Pfaendtner, Lilo D Pozzo, Chun-Long Chen, James J De Yoreo, Andrew L Ferguson
Computational and Experimental Determination of the Properties, Structure, and Stability of Peptoid Nanosheets and Nanotubes. Biomacromolecules (2023)
Dongsheng Li, Qian Chen, Jaehun Chun, Kristen A Fichthorn, James J De Yoreo, Haimei Zheng
Nanoparticle Assembly and Oriented Attachment: Correlating Controlling Factors to the Resulting Structures. Chemical reviews (2023)
Brenna M Knight, Kevin J Edgar, James J De Yoreo, Patricia M Dove
Chitosan as a Canvas for Studies of Macromolecular Controls on CaCO 3 Biological Crystallization. Biomacromolecules 24 (3) (2023)
Wenchao Yang, Jinhua Zhan, Kacper J Lachowski, Qiuxiang Yin, James J De Yoreo, Lilo D Pozzo, Chun-Long Chen
Insights into the Biomimetic Synthesis of 2D ZnO Nanomaterials through Peptoid Engineering. The journal of physical chemistry letters (2023)
Thom J Snoeren, Kimo Pressler, Kyle T Kluherz, Kelly M Walsh, James J De Yoreo, Daniel R Gamelin
Luminescence and Covalency in Ytterbium-Doped CrX 3 (X = Cl, Br, I) van der Waals Compounds. Journal of the American Chemical Society (2023)
Dongsheng Li, Qian Chen, Jaehun Chun, Kristen A Fichthorn, James J De Yoreo, Haimei Zheng
Nanoparticle Assembly and Oriented Attachment: Correlating Controlling Factors to the Resulting Structures. Chemical reviews 123 (6) (2023)
Benjamin A Legg, James J De Yoreo
Effects of Size and Shape on the Tolerances for Misalignment and Probabilities for Successful Oriented Attachment of Nanoparticles. Langmuir : the ACS journal of surfaces and colloids (2023)
Brenna M Knight, Kevin J Edgar, James J De Yoreo, Patricia M Dove
Chitosan as a Canvas for Studies of Macromolecular Controls on CaCO 3 Biological Crystallization. Biomacromolecules 24 (3) (2023)
Brenna M Knight, Kevin J Edgar, James J De Yoreo, Patricia M Dove
Chitosan as a Canvas for Studies of Macromolecular Controls on CaCO 3 Biological Crystallization. Biomacromolecules 24 (3) (2023)
Benjamin A Legg, James J De Yoreo
Effects of Size and Shape on the Tolerances for Misalignment and Probabilities for Successful Oriented Attachment of Nanoparticles. Langmuir : the ACS journal of surfaces and colloids 39 (8) (2023)
Robert G Alberstein, Jesse L Prelesnik, Elias Nakouzi, Shuai Zhang, James J De Yoreo, Jim Pfaendtner, F Akif Tezcan, Christopher J Mundy
Discrete Orientations of Interfacial Waters Direct Crystallization of Mica-Binding Proteins. The journal of physical chemistry letters 14 (1) (2022)
Robert G Alberstein, Jesse L Prelesnik, Elias Nakouzi, Shuai Zhang, James J De Yoreo, Jim Pfaendtner, F Akif Tezcan, Christopher J Mundy
Discrete Orientations of Interfacial Waters Direct Crystallization of Mica-Binding Proteins. The journal of physical chemistry letters 14 (1) (2022)
Mingfei Zhao, Kacper J Lachowski, Shuai Zhang, Sarah Alamdari, Janani Sampath, Peng Mu, Christopher J Mundy, Jim Pfaendtner, James J De Yoreo, Chun-Long Chen, Lilo D Pozzo, Andrew L Ferguson
Hierarchical Self-Assembly Pathways of Peptoid Helices and Sheets. Biomacromolecules 23 (3) (2022)
Madison Monahan, Micaela Homer, Shuai Zhang, Renyu Zheng, Chun-Long Chen, James J De Yoreo, Brandi M Cossairt
Impact of Nanoparticle Size and Surface Chemistry on Peptoid Self-Assembly. ACS nano 16 (5) (2022)
Theodore A Cohen, David Sharp, Kyle T Kluherz, Yueyang Chen, Christopher Munley, Rayne T Anderson, Connor J Swanson, James J De Yoreo, Christine K Luscombe, Arka Majumdar, Daniel R Gamelin, J Devin Mackenzie
Direct Patterning of Perovskite Nanocrystals on Nanophotonic Cavities with Electrohydrodynamic Inkjet Printing. Nano letters 22 (14) (2022)
Robert G Alberstein, Jesse L Prelesnik, Elias Nakouzi, Shuai Zhang, James J De Yoreo, Jim Pfaendtner, F Akif Tezcan, Christopher J Mundy
Discrete Orientations of Interfacial Waters Direct Crystallization of Mica-Binding Proteins. The journal of physical chemistry letters (2022)
Xin Qi, Biao Jin, Jinhua Zhan, Feng Yan, James J De Yoreo, Chun-Long Chen, Jim Pfaendtner
Molecular Driving Force for Facet Selectivity of Sequence-Defined Amphiphilic Peptoids at Au-Water Interfaces. The journal of physical chemistry. B 126 (27) (2022)
Lili Liu, Jaehun Chun, Xin Zhang, Michel J Sassi, Andrew G Stack, Carolyn I Pearce, Sue B Clark, Kevin M Rosso, James J De Yoreo, Greg A Kimmel
Radiolysis and Radiation-Driven Dynamics of Boehmite Dissolution Observed by In Situ Liquid-Phase TEM. Environmental science & technology 56 (8) (2022)
Rachelle M S Smith, Mehran Amiri, Nicolas P Martin, Alice Lulich, Lauren N Palys, Guomin Zhu, James J De Yoreo, May Nyman
Solvent-Driven Transformation of Zn/Cd 2+ -Deoxycholate Assemblies. Inorganic chemistry 61 (3) (2022)
Li Shao, Jinrong Ma, Jesse L Prelesnik, Yicheng Zhou, Mary Nguyen, Mingfei Zhao, Samson A Jenekhe, Sergei V Kalinin, Andrew L Ferguson, Jim Pfaendtner, Christopher J Mundy, James J De Yoreo, François Baneyx, Chun-Long Chen
Hierarchical Materials from High Information Content Macromolecular Building Blocks: Construction, Dynamic Interventions, and Prediction. Chemical reviews (2022)
Joshua A Hammons, Marcel D Baer, Tengyue Jian, Jonathan R I Lee, Thomas M Weiss, James J De Yoreo, Aleksandr Noy, Chun-Long Chen, Anthony Van Buuren
Early-Stage Aggregation and Crystalline Interactions of Peptoid Nanomembranes. The journal of physical chemistry letters 12 (26) (2021)
Sergei V Kalinin, Shuai Zhang, Sai Mani Prudhvi Valleti, Harley Pyles, David Baker, James J De Yoreo, Maxim Ziatdinov
Disentangling Rotational Dynamics and Ordering Transitions in a System of Self-Organizing Protein Nanorods via Rotationally Invariant Latent Representations. ACS nano 15 (4) (2021)
Jinrong Ma, Bin Cai, Shuai Zhang, Tengyue Jian, James J De Yoreo, Chun-Long Chen, François Baneyx
Nanoparticle-Mediated Assembly of Peptoid Nanosheets Functionalized with Solid-Binding Proteins: Designing Heterostructures for Hierarchy. Nano letters 21 (4) (2021)
Changyu Shao, Zhisen Zhang, Wenjing Jin, Zhan Zhang, Biao Jin, Shuqin Jiang, Haihua Pan, Ruikang Tang, James J De Yoreo, Xiang Yang Liu
Oriented Crystallization of Hydroxyapatite in Self-Assembled Peptide Fibrils as a Bonelike Material. ACS biomaterials science & engineering (2021)
Biao Jin, Yanming Wang, Chuan-Hong Jin, James J De Yoreo, Ruikang Tang
Revealing Au13 as Elementary Clusters During the Early Formation of Au Nanocrystals. The journal of physical chemistry letters 12 (25) (2021)
Daniel J Müller, Andra C Dumitru, Cristina Lo Giudice, Hermann Eduard Gaub, Peter Hinterdorfer, Gerhard Hummer, James J De Yoreo, Yves F Dufrêne, David Alsteens
Atomic Force Microscopy-Based Force Spectroscopy and Multiparametric Imaging of Biomolecular and Cellular Systems. Chemical reviews 121 (19) (2020)
Maxim Ziatdinov, Shuai Zhang, Orion Dollar, Jim Pfaendtner, Christopher J Mundy, Xin Li, Harley Pyles, David Baker, James J De Yoreo, Sergei V Kalinin
Quantifying the Dynamics of Protein Self-Organization Using Deep Learning Analysis of Atomic Force Microscopy Data. Nano letters 21 (1) (2020)
Brittney Hellner, Sarah Alamdari, Harley Pyles, Shuai Zhang, Arushi Prakash, Kayla G Sprenger, James J De Yoreo, David Baker, Jim Pfaendtner, François Baneyx
Sequence-Structure-Binding Relationships Reveal Adhesion Behavior of the Car9 Solid-Binding Peptide: An Integrated Experimental and Simulation Study. Journal of the American Chemical Society 142 (5) (2020)
Michael C De Siena, Sidney E Creutz, Annie Regan, Paul Malinowski, Qianni Jiang, Kyle T Kluherz, Guomin Zhu, Zhong Lin, James J De Yoreo, Xiaodong Xu, Jiun-Haw Chu, Daniel R Gamelin
Two-Dimensional van der Waals Nanoplatelets with Robust Ferromagnetism. Nano letters 20 (3) (2020)
Benjamin A Legg, Marcel D Baer, Jaehun Chun, Gregory K Schenter, Shifeng Huang, Yuanzhong Zhang, Younjin Min, Christopher J Mundy, James J De Yoreo
Visualization of Aluminum Ions at the Mica Water Interface Links Hydrolysis State-to-Surface Potential and Particle Adhesion. Journal of the American Chemical Society 142 (13) (2020)
Andrew Ritchhart, Madison Monahan, Julian Mars, Michael F Toney, James J De Yoreo, Brandi M Cossairt
Covalently Linked, Two-Dimensional Quantum Dot Assemblies. Langmuir : the ACS journal of surfaces and colloids 36 (33) (2020)
Bart Stel, Ilja Gunkel, Xiaodan Gu, Thomas P Russell, James J De Yoreo, Magalí Lingenfelder
Contrasting Chemistry of Block Copolymer Films Controls the Dynamics of Protein Self-Assembly at the Nanoscale. ACS nano 13 (4) (2019)
Zibo Chen, Matthew C Johnson, Jiajun Chen, Matthew J Bick, Scott E Boyken, Baihan Lin, James J De Yoreo, Justin M Kollman, David Baker, Frank Dimaio
Self-Assembling 2D Arrays with de Novo Protein Building Blocks. Journal of the American Chemical Society 141 (22) (2019)
Lili Liu, Maria L Sushko, Edgar C Buck, Xin Zhang, Libor Kovarik, Zhizhang Shen, Jinhui Tao, Elias Nakouzi, Jun Liu, James J De Yoreo
Revisiting the Growth Mechanism of Hierarchical Semiconductor Nanostructures: The Role of Secondary Nucleation in Branch Formation. The journal of physical chemistry letters 10 (21) (2019)
Meirong Zong, Xin Zhang, Yining Wang, Xiaopeng Huang, Jianbin Zhou, Zheming Wang, James J De Yoreo, Xiancai Lu, Kevin M Rosso
Synthesis of 2D Hexagonal Hematite Nanosheets and the Crystal Growth Mechanism. Inorganic chemistry 58 (24) (2019)
Wenwen Cui, Xin Zhang, Carolyn I Pearce, Ying Chen, Shuai Zhang, Wen Liu, Mark H Engelhard, Libor Kovarik, Meirong Zong, Hailin Zhang, Eric D Walter, Zihua Zhu, Steve M Heald, Micah P Prange, James J De Yoreo, Shili Zheng, Yi Zhang, Sue B Clark, Ping Li, Zheming Wang, Kevin M Rosso
Cr(III) Adsorption by Cluster Formation on Boehmite Nanoplates in Highly Alkaline Solution. Environmental science & technology 53 (18) (2019)
Tyler J Milstein, Kyle T Kluherz, Daniel M Kroupa, Christian S Erickson, James J De Yoreo, Daniel R Gamelin
Anion Exchange and the Quantum-Cutting Energy Threshold in Ytterbium-Doped CsPb(Cl1- xBr x)3 Perovskite Nanocrystals. Nano letters 19 (3) (2019)
Aashish Tuladhar, Zizwe A Chase, Marcel D Baer, Benjamin A Legg, Jinhui Tao, Shuai Zhang, Austin D Winkelman, Zheming Wang, Christopher J Mundy, James J De Yoreo, Hong-Fei Wang
Direct Observation of the Orientational Anisotropy of Buried Hydroxyl Groups inside Muscovite Mica. Journal of the American Chemical Society 141 (5) (2019)
Elias Nakouzi, Jennifer A Soltis, Benjamin A Legg, Gregory K Schenter, Xin Zhang, Trent R Graham, Kevin M Rosso, Lawrence M Anovitz, James J De Yoreo, Jaehun Chun
Impact of Solution Chemistry and Particle Anisotropy on the Collective Dynamics of Oriented Aggregation. ACS nano 12 (10) (2018)
Seok-Jin Kim, Javeed Mahmood, Changmin Kim, Gao-Feng Han, Seong-Wook Kim, Sun-Min Jung, Guomin Zhu, James J De Yoreo, Guntae Kim, Jong-Beom Baek
Defect-Free Encapsulation of Fe0 in 2D Fused Organic Networks as a Durable Oxygen Reduction Electrocatalyst. Journal of the American Chemical Society 140 (5) (2018)
Alex W Robertson, Guomin Zhu, B Layla Mehdi, Robert M J Jacobs, James J De Yoreo, Nigel D Browning
Nanoparticle Immobilization for Controllable Experiments in Liquid-Cell Transmission Electron Microscopy. ACS applied materials & interfaces 10 (26) (2018)
Lawrence M Anovitz, Xin Zhang, Jennifer A Soltis, E Nakouzi, Anthony J Krzysko, Jaehun Chun, G K Schenter, Trent R Graham, Kevin M Rosso, James J De Yoreo, Andrew G Stack, M Bleuel, C Gagnon, D F R Mildner, J Ilavsky, I Kuzmenko
Effects of Ionic Strength, Salt, and pH on Aggregation of Boehmite Nanocrystals: Tumbler Small-Angle Neutron and X-ray Scattering and Imaging Analysis. Langmuir : the ACS journal of surfaces and colloids 34 (51) (2018)
Jinhui Tao, Andreas J Fijneman, Jiaqi Wan, Saumya Prajapati, Kaushik Mukherjee, Alejandro Fernández-Martínez, Janet Moradian-Oldak, James J De Yoreo
Control of Calcium Phosphate Nucleation and Transformation through Interactions of Enamelin and Amelogenin Exhibits the "Goldilocks Effect". Crystal growth & design 18 (12) (2018)