Jocelyne Vreede

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 15

Top Venues

Nucleic acids research

Chembiochem : a European journal of chemical biology

Journal of chemical theory and computation

PLoS computational biology

University of Amsterdam Van 't Hoff Institute for Molecular Sciences

University of Amsterdam Swammerdam Institute for Life Sciences (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Amsterdam Van 't Hoff Institute for Molecular Sciences Oct 01 2011

Netherlands

Assistant Professor :: Computational Chemistry

University of Amsterdam Van 't Hoff Institute for Molecular Sciences Mar 01 2009 - Oct 01 2011

Netherlands

post doc on VENI grant :: Computational Chemistry

University of Amsterdam Van 't Hoff Institute for Molecular Sciences Jun 15 2006 - Feb 28 2009

Netherlands

post doc :: Computational Chemistry

Education History

University of Amsterdam Swammerdam Institute for Life Sciences May 01 2001 - Feb 15 2007

Netherlands

PHD :: Molecular Microbial Physiology

University of Amsterdam Van 't Hoff Institute for Molecular Sciences Sep 01 1996 - Mar 30 2001

Netherlands

MSC :: Molecular Simulation

Publications

Yimin Hu, Samuel Schwab, Silvia Deiss, Pedro Escudeiro, Thor van Heesch, Joe D Joiner, Jocelyne Vreede, Marcus D Hartmann, Andrei N Lupas, Birte Hernandez Alvarez, Vikram Alva, Remus Thei Dame
Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Nucleic acids research 52 (14) (2024)
Canan Durukan, Federica Arbore, Rasmus Klintrot, Carlo Bigiotti, Ioana M Ilie, Jocelyne Vreede, Tom N Grossmann, Sven Hennig
Binding Dynamics of a Stapled Peptide Targeting the Transcription Factor NF-Y. Chembiochem : a European journal of chemical biology 25 (9) (2024)
Canan Durukan, Federica Arbore, Rasmus Klintrot, Carlo Bigiotti, Ioana M Ilie, Jocelyne Vreede, Tom N Grossmann, Sven Hennig
Binding Dynamics of a Stapled Peptide Targeting the Transcription Factor NF-Y. Chembiochem : a European journal of chemical biology (2024)
Yimin Hu, Samuel Schwab, Silvia Deiss, Pedro Escudeiro, Thor van Heesch, Joe D Joiner, Jocelyne Vreede, Marcus D Hartmann, Andrei N Lupas, Birte Hernandez Alvarez, Vikram Alva, Remus Thei Dame
Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Nucleic acids research 52 (14) (2024)
Yimin Hu, Samuel Schwab, Silvia Deiss, Pedro Escudeiro, Thor van Heesch, Joe D Joiner, Jocelyne Vreede, Marcus D Hartmann, Andrei N Lupas, Birte Hernandez Alvarez, Vikram Alva, Remus Thei Dame
Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Nucleic acids research 52 (14) (2024)
Canan Durukan, Federica Arbore, Rasmus Klintrot, Carlo Bigiotti, Ioana M Ilie, Jocelyne Vreede, Tom N Grossmann, Sven Hennig
Binding Dynamics of a Stapled Peptide Targeting the Transcription Factor NF-Y. Chembiochem : a European journal of chemical biology 25 (9) (2024)
Yimin Hu, Samuel Schwab, Silvia Deiss, Pedro Escudeiro, Thor van Heesch, Joe D Joiner, Jocelyne Vreede, Marcus D Hartmann, Andrei N Lupas, Birte Hernandez Alvarez, Vikram Alva, Remus Thei Dame
Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Nucleic acids research (2024)
Aderik Voorspoels, Jocelyne Vreede, Enrico Carlon
Rigid Base Biasing in Molecular Dynamics Enables Enhanced Sampling of DNA Conformations. Journal of chemical theory and computation 19 (3) (2023)
Aderik Voorspoels, Jocelyne Vreede, Enrico Carlon
Rigid Base Biasing in Molecular Dynamics Enables Enhanced Sampling of DNA Conformations. Journal of chemical theory and computation (2023)
Aderik Voorspoels, Jocelyne Vreede, Enrico Carlon
Rigid Base Biasing in Molecular Dynamics Enables Enhanced Sampling of DNA Conformations. Journal of chemical theory and computation 19 (3) (2023)
Thor van Heesch, Peter G Bolhuis, Jocelyne Vreede
Decoding dissociation of sequence-specific protein-DNA complexes with non-equilibrium simulations. Nucleic acids research (2023)
Sander Roet, Ferry Hooft, Peter G Bolhuis, David W H Swenson, Jocelyne Vreede
Path Sampling Simulations Reveal How the Q61L Mutation Alters the Dynamics of KRas. The journal of physical chemistry. B 126 (48) (2022)
Alberto Pérez de Alba Ortíz, Jocelyne Vreede, Bernd Ensing
Sequence dependence of transient Hoogsteen base pairing in DNA. PLoS computational biology 18 (5) (2022)
Sophie Blinker, Jocelyne Vreede, Peter Setlow, Stanley Brul
Predicting the Structure and Dynamics of Membrane Protein GerAB from Bacillus subtilis. International journal of molecular sciences 22 (7) (2021)
Enrico Riccardi, Eva C van Mastbergen, William Wiley Navarre, Jocelyne Vreede
Predicting the mechanism and rate of H-NS binding to AT-rich DNA. PLoS computational biology 15 (3) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jocelyne Vreede