Keji Zhao

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 40

Top Topics

Signaling Pathway

Top Venues

Nature communications

Nucleic acids research

Nature cell biology

Nature immunology

This page only lists publications with an associated author ORCID identifier.

Publications

Xuezheng Wang, Keji Zhao
Reactivating antitumor immunity by inhibiting JMJD1C. Nature immunology 25 (3) (2024)
Fei Ma, Yaqiang Cao, Hansen Du, Fatima Zohra Braikia, Le Zong, Noah Ollikainen, Marc Bayer, Xiang Qiu, Bongsoo Park, Roshni Roy, Satabdi Nandi, Dimitra Sarantopoulou, Andrew Ziman, Aisha Haley Bianchi, Isabel Beerman, Keji Zhao, Rudolf Grosschedl, Ranjan Sen
Three-dimensional chromatin reorganization regulates B cell development during ageing. Nature cell biology 26 (6) (2024)
Fei Ma, Yaqiang Cao, Hansen Du, Fatima Zohra Braikia, Le Zong, Noah Ollikainen, Marc Bayer, Xiang Qiu, Bongsoo Park, Roshni Roy, Satabdi Nandi, Dimitra Sarantopoulou, Andrew Ziman, Aisha Haley Bianchi, Isabel Beerman, Keji Zhao, Rudolf Grosschedl, Ranjan Sen
Three-dimensional chromatin reorganization regulates B cell development during ageing. Nature cell biology (2024)
Velinda Vidaurre, Annabelle Song, Taibo Li, Wai Lim Ku, Keji Zhao, Jiang Qian, Xin Chen
The Drosophila histone methyl-transferase SET1 coordinates multiple signaling pathways in regulating male germline stem cell maintenance and differentiation. Development (Cambridge, England) (2024)
Xuezheng Wang, Keji Zhao
Reactivating antitumor immunity by inhibiting JMJD1C. Nature immunology 25 (3) (2024)
Fei Ma, Yaqiang Cao, Hansen Du, Fatima Zohra Braikia, Le Zong, Noah Ollikainen, Marc Bayer, Xiang Qiu, Bongsoo Park, Roshni Roy, Satabdi Nandi, Dimitra Sarantopoulou, Andrew Ziman, Aisha Haley Bianchi, Isabel Beerman, Keji Zhao, Rudolf Grosschedl, Ranjan Sen
Three-dimensional chromatin reorganization regulates B cell development during ageing. Nature cell biology 26 (6) (2024)
Velinda Vidaurre, Annabelle Song, Taibo Li, Wai Lim Ku, Keji Zhao, Jiang Qian, Xin Chen
The Drosophila histone methyl-transferase SET1 coordinates multiple signaling pathways in regulating male germline stem cell maintenance and differentiation. bioRxiv : the preprint server for biology (2024)
Velinda Vidaurre, Annabelle Song, Taibo Li, Wai Lim Ku, Keji Zhao, Jiang Qian, Xin Chen
The Drosophila histone methyl-transferase SET1 coordinates multiple signaling pathways in regulating male germline stem cell maintenance and differentiation. bioRxiv : the preprint server for biology (2024)
Velinda Vidaurre, Annabelle Song, Taibo Li, Wai Lim Ku, Keji Zhao, Jiang Qian, Xin Chen
The Drosophila histone methyl-transferase SET1 coordinates multiple signaling pathways in regulating male germline stem cell maintenance and differentiation. Development (Cambridge, England) (2024)
Gang Ren, Wai Lim Ku, Guangzhe Ge, Jackson A Hoffman, Jee Youn Kang, Qingsong Tang, Kairong Cui, Yong He, Yukun Guan, Bin Gao, Chengyu Liu, Trevor K Archer, Keji Zhao
Acute depletion of BRG1 reveals its primary function as an activator of transcription. Nature communications 15 (1) (2024)
Fei Ma, Yaqiang Cao, Hansen Du, Fatima Zohra Braikia, Le Zong, Noah Ollikainen, Marc Bayer, Xiang Qiu, Bongsoo Park, Roshni Roy, Satabdi Nandi, Dimitra Sarantopoulou, Andrew Ziman, Aisha Haley Bianchi, Isabel Beerman, Keji Zhao, Rudolf Grosschedl, Ranjan Sen
Three-dimensional chromatin reorganization regulates B cell development during ageing. Nature cell biology 26 (6) (2024)
Gang Ren, Wai Lim Ku, Guangzhe Ge, Jackson A Hoffman, Jee Youn Kang, Qingsong Tang, Kairong Cui, Yong He, Yukun Guan, Bin Gao, Chengyu Liu, Trevor K Archer, Keji Zhao
Acute depletion of BRG1 reveals its primary function as an activator of transcription. Nature communications 15 (1) (2024)
Fei Ma, Yaqiang Cao, Hansen Du, Fatima Zohra Braikia, Le Zong, Noah Ollikainen, Marc Bayer, Xiang Qiu, Bongsoo Park, Roshni Roy, Satabdi Nandi, Dimitra Sarantopoulou, Andrew Ziman, Aisha Haley Bianchi, Isabel Beerman, Keji Zhao, Rudolf Grosschedl, Ranjan Sen
Three-dimensional chromatin reorganization regulates B cell development during ageing. Nature cell biology 26 (6) (2024)
Gang Ren, Wai Lim Ku, Guangzhe Ge, Jackson A Hoffman, Jee Youn Kang, Qingsong Tang, Kairong Cui, Yong He, Yukun Guan, Bin Gao, Chengyu Liu, Trevor K Archer, Keji Zhao
Acute depletion of BRG1 reveals its primary function as an activator of transcription. Nature communications 15 (1) (2024)
Velinda Vidaurre, Annabelle Song, Taibo Li, Wai Lim Ku, Keji Zhao, Jiang Qian, Xin Chen
The Drosophila histone methyl-transferase SET1 coordinates multiple signaling pathways in regulating male germline stem cell maintenance and differentiation. bioRxiv : the preprint server for biology (2024)
Xuezheng Wang, Keji Zhao
Reactivating antitumor immunity by inhibiting JMJD1C. Nature immunology (2024)
Velinda Vidaurre, Annabelle Song, Taibo Li, Wai Lim Ku, Keji Zhao, Jiang Qian, Xin Chen
The Drosophila histone methyl-transferase SET1 coordinates multiple signaling pathways in regulating male germline stem cell maintenance and differentiation. bioRxiv : the preprint server for biology (2024)
Velinda Vidaurre, Annabelle Song, Taibo Li, Wai Lim Ku, Keji Zhao, Jiang Qian, Xin Chen
The Drosophila histone methyltransferase SET1 coordinates multiple signaling pathways in regulating male germline stem cell maintenance and differentiation. Development (Cambridge, England) 151 (15) (2024)
Yaqiang Cao, Shuai Liu, Kairong Cui, Qingsong Tang, Keji Zhao
Hi-TrAC detects active sub-TADs and reveals internal organizations of super-enhancers. Nucleic acids research (2023)
Shuai Liu, Keji Zhao
Disorder-based T cell developmental order. Nature immunology (2023)
Shuaikun Su, Yutong Xue, Alexei Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L Martindale, Wen Li, Wai Lim Ku, Keji Zhao, Supriyo De, Weiping Shen, Payel Sen, Myriam Gorospe, Dongyi Xu, Weidong Wang
A dual-activity topoisomerase complex regulates mRNA translation and turnover. Nucleic acids research 50 (12) (2022)
Lixia Pan, Wai Lim Ku, Qingsong Tang, Yaqiang Cao, Keji Zhao
scPCOR-seq enables co-profiling of chromatin occupancy and RNAs in single cells. Communications biology 5 (1) (2022)
Shuai Liu, Yaqiang Cao, Kairong Cui, Qingsong Tang, Keji Zhao
Hi-TrAC reveals division of labor of transcription factors in organizing chromatin loops. Nature communications 13 (1) (2022)
Shuaikun Su, Yutong Xue, Alexei Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L Martindale, Wen Li, Wai Lim Ku, Keji Zhao, Supriyo De, Weiping Shen, Payel Sen, Myriam Gorospe, Dongyi Xu, Weidong Wang
A dual-activity topoisomerase complex regulates mRNA translation and turnover. Nucleic acids research 50 (12) (2022)
Yaqiang Cao, Shuai Liu, Gang Ren, Qingsong Tang, Keji Zhao
cLoops2: a full-stack comprehensive analytical tool for chromatin interactions. Nucleic acids research 50 (1) (2022)
Shuaikun Su, Yutong Xue, Alexei Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L Martindale, Wen Li, Wai Lim Ku, Keji Zhao, Supriyo De, Weiping Shen, Payel Sen, Myriam Gorospe, Dongyi Xu, Weidong Wang
A dual-activity topoisomerase complex regulates mRNA translation and turnover. Nucleic acids research 50 (12) (2022)
Sang-A Park, Yun-Ji Lim, Wai Lim Ku, Dunfang Zhang, Kairong Cui, Liu-Ya Tang, Cheryl Chia, Peter Zanvit, Zuojia Chen, Wenwen Jin, Dandan Wang, Junji Xu, Ousheng Liu, Fu Wang, Alexander Cain, Nancy Guo, Hiroko Nakatsukasa, Chuan Wu, Ying E Zhang, Keji Zhao, WanJun Chen
Opposing functions of circadian protein DBP and atypical E2F family E2F8 in anti-tumor Th9 cell differentiation. Nature communications 13 (1) (2022)
Shuaikun Su, Yutong Xue, Alexei Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L Martindale, Wen Li, Wai Lim Ku, Keji Zhao, Supriyo De, Weiping Shen, Payel Sen, Myriam Gorospe, Dongyi Xu, Weidong Wang
A dual-activity topoisomerase complex regulates mRNA translation and turnover. Nucleic acids research 50 (12) (2022)
Weiwu Gao, Wai Lim Ku, Lixia Pan, Jonathan Perrie, Tingting Zhao, Gangqing Hu, Yuzhang Wu, Jun Zhu, Bing Ni, Keji Zhao
Multiplex indexing approach for the detection of DNase I hypersensitive sites in single cells. Nucleic acids research 49 (10) (2021)
Benjamin C Carter, Keji Zhao
The epigenetic basis of cellular heterogeneity. Nature reviews. Genetics 22 (4) (2020)
Yuyoung Joo, Yutong Xue, Yue Wang, Ross A McDevitt, Nirnath Sah, Simone Bossi, Shuaikun Su, Seung Kyu Lee, Wei Peng, Aoji Xie, Yongqing Zhang, Yi Ding, Wai Lim Ku, Soumita Ghosh, Kenneth Fishbein, Weiping Shen, Richard Spencer, Kevin Becker, Keji Zhao, Mark P Mattson, Henriette van Praag, Alexei Sharov, Weidong Wang
Topoisomerase 3β knockout mice show transcriptional and behavioural impairments associated with neurogenesis and synaptic plasticity. Nature communications 11 (1) (2020)
Li Wang, Jun Tang, Xia Yang, Peter Zanvit, Kairong Cui, Wai Lim Ku, Wenwen Jin, Dunfang Zhang, Nathan Goldberg, Alexander Cain, Bing Ni, Keji Zhao, Yuzhang Wu, WanJun Chen
TGF-β induces ST2 and programs ILC2 development. Nature communications 11 (1) (2020)
Zhen Shi, Cindy Lim, Vuong Tran, Kairong Cui, Keji Zhao, Xin Chen
Single-cyst transcriptome analysis of Drosophila male germline stem cell lineage. Development (Cambridge, England) 147 (8) (2020)
Benjamin C Carter, Wai Lim Ku, Jee Youn Kang, Gangqing Hu, Jonathan Perrie, Qingsong Tang, Keji Zhao
Author Correction: Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq). Nature communications 11 (1) (2020)
Wai Lim Ku, Kosuke Nakamura, Weiwu Gao, Kairong Cui, Gangqing Hu, Qingsong Tang, Bing Ni, Keji Zhao
Single-cell chromatin immunocleavage sequencing (scChIC-seq) to profile histone modification. Nature methods 16 (4) (2019)
Berkley E Gryder, Silvia Pomella, Carly Sayers, Xiaoli S Wu, Young Song, Anna M Chiarella, Sukriti Bagchi, Hsien-Chao Chou, Ranu S Sinniah, Ashley Walton, Xinyu Wen, Rossella Rota, Nathaniel A Hathaway, Keji Zhao, Jiji Chen, Christopher R Vakoc, Jack F Shern, Benjamin Z Stanton, Javed Khan
Histone hyperacetylation disrupts core gene regulatory architecture in rhabdomyosarcoma. Nature genetics 51 (12) (2019)
Christelle Harly, Devin Kenney, Gang Ren, Binbin Lai, Tobias Raabe, Qi Yang, Margaret C Cam, Hai-Hui Xue, Keji Zhao, Avinash Bhandoola
The transcription factor TCF-1 enforces commitment to the innate lymphoid cell lineage. Nature immunology 20 (9) (2019)
Benjamin C Carter, Wai Lim Ku, Jee Youn Kang, Gangqing Hu, Jonathan Perrie, Qingsong Tang, Keji Zhao
Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq). Nature communications 10 (1) (2019)
Seung Kyu Lee, Yutong Xue, Weiping Shen, Yongqing Zhang, Yuyoung Joo, Muzammil Ahmad, Madoka Chinen, Yi Ding, Wai Lim Ku, Supriyo De, Elin Lehrmann, Kevin G Becker, Elissa P Lei, Keji Zhao, Sige Zou, Alexei Sharov, Weidong Wang
Topoisomerase 3β interacts with RNAi machinery to promote heterochromatin formation and transcriptional silencing in Drosophila. Nature communications 9 (1) (2018)
Binbin Lai, Qingsong Tang, Wenfei Jin, Gangqing Hu, Darawalee Wangsa, Kairong Cui, Benjamin Z Stanton, Gang Ren, Yi Ding, Ming Zhao, Shuai Liu, Jiuzhou Song, Thomas Ried, Keji Zhao
Trac-looping measures genome structure and chromatin accessibility. Nature methods 15 (9) (2018)