Kristen M Naegle

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 17

Top Venues

bioRxiv : the preprint server for biology

PLoS computational biology

The Journal of biological chemistry

eLife

University of Virginia

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Virginia Nov 01 2018

United States

Associate Professor :: Biomedical Engineering

Washington University in St. Louis Jul 01 2012 - Oct 31 2018

United States

Assistant Professor :: Biomedical Engineering

Publications

Alekhya Kandoor, Gabrielle Martinez, Julianna M Hitchcock, Savannah Angel, Logan Campbell, Saqib Rizvi, Kristen M Naegle
CoDIAC: A comprehensive approach for interaction analysis reveals novel insights into SH2 domain function and regulation. bioRxiv : the preprint server for biology (2024)
Sam Crowl, Maeve Bella Coleman, Andrew Chaphiv, Kristen M Naegle
A systematic analysis of the effects of splicing on the diversity of post-translational modifications in protein isoforms. bioRxiv : the preprint server for biology (2024)
Sam Crowl, Maeve Bella Coleman, Andrew Chaphiv, Kristen M Naegle
A systematic analysis of the effects of splicing on the diversity of post-translational modifications in protein isoforms. bioRxiv : the preprint server for biology (2024)
Alekhya Kandoor, Gabrielle Martinez, Julianna M Hitchcock, Savannah Angel, Logan Campbell, Saqib Rizvi, Kristen M Naegle
CoDIAC: A comprehensive approach for interaction analysis reveals novel insights into SH2 domain function and regulation. bioRxiv : the preprint server for biology (2024)
Alekhya Kandoor, Gabrielle Martinez, Julianna M Hitchcock, Savannah Angel, Logan Campbell, Saqib Rizvi, Kristen M Naegle
CoDIAC: A comprehensive approach for interaction analysis reveals novel insights into SH2 domain function and regulation. bioRxiv : the preprint server for biology (2024)
Sam Crowl, Maeve Bella Coleman, Andrew Chaphiv, Kristen M Naegle
A systematic analysis of the effects of splicing on the diversity of post-translational modifications in protein isoforms. bioRxiv : the preprint server for biology (2024)
Sam Crowl, Maeve Bella Coleman, Andrew Chaphiv, Kristen M Naegle
A systematic analysis of the effects of splicing on the diversity of post-translational modifications in protein isoforms. bioRxiv : the preprint server for biology (2024)
Anders R Nelson, Steven L Christiansen, Kristen M Naegle, Jeffrey J Saucerman
Logic-based mechanistic machine learning on high-content images reveals how drugs differentially regulate cardiac fibroblasts. bioRxiv : the preprint server for biology (2023)
Anders R Nelson, Steven L Christiansen, Kristen M Naegle, Jeffrey J Saucerman
Logic-based mechanistic machine learning on high-content images reveals how drugs differentially regulate cardiac fibroblasts. bioRxiv : the preprint server for biology (2023)
Anders R Nelson, Steven L Christiansen, Kristen M Naegle, Jeffrey J Saucerman
Logic-based mechanistic machine learning on high-content images reveals how drugs differentially regulate cardiac fibroblasts. bioRxiv : the preprint server for biology (2023)
Sam Crowl, Benjamin Jordan, Hamza Ahmed, Cynthia X Ma, Kristen M Naegle
KSTAR: An algorithm to predict patient-specific kinase activities from phosphoproteomic data. Nature communications 13 (1) (2022)
Bingjie Xue, Benjamin Jordan, Saqib Rizvi, Kristen M Naegle
KinPred: A unified and sustainable approach for harnessing proteome-level human kinase-substrate predictions. PLoS computational biology 17 (2) (2021)
Kristen M Naegle
Ten simple rules for effective presentation slides. PLoS computational biology 17 (12) (2021)
Arshag D Mooradian, Sjoerd van der Post, Kristen M Naegle, Jason M Held
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis. PLoS computational biology 16 (3) (2020)
Tom Ronan, Roman Garnett, Kristen M Naegle
New analysis pipeline for high-throughput domain-peptide affinity experiments improves SH2 interaction data. The Journal of biological chemistry 295 (32) (2020)
Roman Sloutsky, Kristen M Naegle
ASPEN, a methodology for reconstructing protein evolution with improved accuracy using ensemble models. eLife 8 (2019)
Roman Sloutsky, Kristen M Naegle
High-Resolution Identification of Specificity Determining Positions in the LacI Protein Family Using Ensembles of Sub-Sampled Alignments. PloS one 11 (9) (2016)

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Publication Activity (10 Years)

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Kristen M Naegle