Li Chen

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 32

Top Venues

bioRxiv : the preprint server for biology

Bioinformatics (Oxford, England)

PLoS computational biology

Blood cancer journal

Indiana University – Purdue University Indianapolis

Emory University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Indiana University – Purdue University Indianapolis Oct 01 2019

United States

Assistant Professor :: Department of Medicine

Auburn University Aug 15 2017 - Sep 30 2019

United States

Assistant Professor :: Health Outcomes Research and Policy

Education History

Emory University Aug 31 2011 - Aug 04 2017

United States

PHD :: Computer Science

Johns Hopkins University Aug 31 2010 - Aug 31 2011

United States

MSC :: Computer Science

Johns Hopkins University Aug 31 2009 - May 15 2011

United States

MSC :: Biostatistics

Publications

Javlon Nizomov, Weijia Jin, Yi Xia, Yunlong Liu, Zhigang Li, Li Chen
MPRAVarDB: an online database and web server for exploring regulatory effects of genetic variants. bioRxiv : the preprint server for biology (2024)
Weijia Jin, Yi Xia, Sai Ritesh Thela, Yunlong Liu, Li Chen
In silico generation and augmentation of regulatory variants from massively parallel reporter assay using conditional variational autoencoder. bioRxiv : the preprint server for biology (2024)
Xin Ma, Sai Ritesh Thela, Fengdi Zhao, Bing Yao, Zhexing Wen, Peng Jin, Jinying Zhao, Li Chen
Deep5hmC: Predicting genome-wide 5-Hydroxymethylcytosine landscape via a multimodal deep learning model. bioRxiv : the preprint server for biology (2024)
Weijia Jin, Yi Xia, Sai Ritesh Thela, Yunlong Liu, Li Chen
In silico generation and augmentation of regulatory variants from massively parallel reporter assay using conditional variational autoencoder. bioRxiv : the preprint server for biology (2024)
Fengdi Zhao, Xin Ma, Bing Yao, Qing Lu, Li Chen
scaDA: A novel statistical method for differential analysis of single-cell chromatin accessibility sequencing data. PLoS computational biology 20 (8) (2024)
Fengdi Zhao, Xin Ma, Bing Yao, Li Chen
scaDA: A Novel Statistical Method for Differential Analysis of Single-Cell Chromatin Accessibility Sequencing Data. bioRxiv : the preprint server for biology (2024)
Weijia Jin, Yi Xia, Sai Ritesh Thela, Yunlong Liu, Li Chen
In silico generation and augmentation of regulatory variants from massively parallel reporter assay using conditional variational autoencoder. bioRxiv : the preprint server for biology (2024)
Weijia Jin, Yi Xia, Sai Ritesh Thela, Yunlong Liu, Li Chen
In silico generation and augmentation of regulatory variants from massively parallel reporter assay using conditional variational autoencoder. bioRxiv : the preprint server for biology (2024)
Fengdi Zhao, Xin Ma, Bing Yao, Li Chen
scaDA: A Novel Statistical Method for Differential Analysis of Single-Cell Chromatin Accessibility Sequencing Data. bioRxiv : the preprint server for biology (2024)
Fengdi Zhao, Xin Ma, Bing Yao, Li Chen
scaDA: A Novel Statistical Method for Differential Analysis of Single-Cell Chromatin Accessibility Sequencing Data. bioRxiv : the preprint server for biology (2024)
Xin Ma, Sai Ritesh Thela, Fengdi Zhao, Bing Yao, Zhexing Wen, Peng Jin, Jinying Zhao, Li Chen
Deep5hmC: Predicting genome-wide 5-Hydroxymethylcytosine landscape via a multimodal deep learning model. bioRxiv : the preprint server for biology (2024)
Fengdi Zhao, Xin Ma, Bing Yao, Li Chen
scaDA: A Novel Statistical Method for Differential Analysis of Single-Cell Chromatin Accessibility Sequencing Data. bioRxiv : the preprint server for biology (2024)
Fengdi Zhao, Xin Ma, Bing Yao, Qing Lu, Li Chen
scaDA: A novel statistical method for differential analysis of single-cell chromatin accessibility sequencing data. PLoS computational biology 20 (8) (2024)
Javlon Nizomov, Weijia Jin, Yi Xia, Yunlong Liu, Zhigang Li, Li Chen
MPRAVarDB: an online database and web server for exploring regulatory effects of genetic variants. bioRxiv : the preprint server for biology (2024)
Fengdi Zhao, Xin Ma, Bing Yao, Qing Lu, Li Chen
scaDA: A novel statistical method for differential analysis of single-cell chromatin accessibility sequencing data. PLoS computational biology 20 (8) (2024)
Fengdi Zhao, Xin Ma, Bing Yao, Qing Lu, Li Chen
scaDA: A novel statistical method for differential analysis of single-cell chromatin accessibility sequencing data. PLoS computational biology 20 (8) (2024)
Fengdi Zhao, Xin Ma, Bing Yao, Qing Lu, Li Chen
scaDA: A novel statistical method for differential analysis of single-cell chromatin accessibility sequencing data. PLoS computational biology 20 (8) (2024)
Xin Ma, Sai Ritesh Thela, Fengdi Zhao, Bing Yao, Zhexing Wen, Peng Jin, Jinying Zhao, Li Chen
Deep5hmC: Predicting genome-wide 5-Hydroxymethylcytosine landscape via a multimodal deep learning model. bioRxiv : the preprint server for biology (2024)
Javlon Nizomov, Weijia Jin, Yi Xia, Yunlong Liu, Zhigang Li, Li Chen
MPRAVarDB: an online database and web server for exploring regulatory effects of genetic variants. bioRxiv : the preprint server for biology (2024)
Aman Agarwal, Li Chen
DeepPHiC: predicting promoter-centered chromatin interactions using a novel deep learning approach. Bioinformatics (Oxford, England) 39 (1) (2023)
Aman Agarwal, Fengdi Zhao, Yuchao Jiang, Li Chen
TIVAN-indel: a computational framework for annotating and predicting non-coding regulatory small insertions and deletions. Bioinformatics (Oxford, England) 39 (2) (2023)
Aman Agarwal, Fengdi Zhao, Yuchao Jiang, Li Chen
TIVAN-indel: a computational framework for annotating and predicting non-coding regulatory small insertions and deletions. Bioinformatics (Oxford, England) 39 (2) (2023)
Xin Ma, Cameron J Shedlock, Terrymar Medina, Roberto A Ribas, Harrison A Clarke, Tara R Hawkinson, Praveen K Dande, Lei Wu, Sara N Burke, Matthew E Merritt, Craig W Vander Kooi, Matthew S Gentry, Nirbhay N Yadav, Li Chen, Ramon C Sun
MetaVision3D: Automated Framework for the Generation of Spatial Metabolome Atlas in 3D. bioRxiv : the preprint server for biology (2023)
Aman Agarwal, Fengdi Zhao, Yuchao Jiang, Li Chen
TIVAN-indel: a computational framework for annotating and predicting non-coding regulatory small insertions and deletions. Bioinformatics (Oxford, England) 39 (2) (2023)
Aman Agarwal, Li Chen
DeepPHiC: predicting promoter-centered chromatin interactions using a novel deep learning approach. Bioinformatics (Oxford, England) 39 (1) (2023)
Aman Agarwal, Fengdi Zhao, Yuchao Jiang, Li Chen
TIVAN-indel: a computational framework for annotating and predicting non-coding regulatory small insertions and deletions. Bioinformatics (Oxford, England) 39 (2) (2023)
Aman Agarwal, Li Chen
DeepPHiC: predicting promoter-centered chromatin interactions using a novel deep learning approach. Bioinformatics (Oxford, England) 39 (1) (2023)
Harrison A Clarke, Xin Ma, Cameron J Shedlock, Terrymar Medina, Tara R Hawkinson, Lei Wu, Roberto A Ribas, Shannon Keohane, Sakthivel Ravi, Jennifer Bizon, Sara Burke, Jose Francisco Abisambra, Matthew Merritt, Boone Prentice, Craig W Vander Kooi, Matthew S Gentry, Li Chen, Ramon C Sun
Spatial Metabolome Lipidome and Glycome from a Single brain Section. bioRxiv : the preprint server for biology (2023)
Aman Agarwal, Li Chen
DeepPHiC: predicting promoter-centered chromatin interactions using a novel deep learning approach. Bioinformatics (Oxford, England) 39 (1) (2023)
Li Chen, Ye Wang, Fengdi Zhao
Exploiting deep transfer learning for the prediction of functional non-coding variants using genomic sequence. Bioinformatics (Oxford, England) 38 (12) (2022)
Wenwen Mei, Zhiwen Jiang, Yang Chen, Li Chen, Aziz Sancar, Yuchao Jiang
Genome-wide circadian rhythm detection methods: systematic evaluations and practical guidelines. Briefings in bioinformatics 22 (3) (2021)
Amit Kumar Mitra, Harish Kumar, Vijay Ramakrishnan, Li Chen, Linda Baughn, Shaji K Kumar, Sundararajan Vincent Rajkumar, Brian G Van Ness
In vitro and ex vivo gene expression profiling reveals differential kinetic response of HSPs and UPR genes is associated with PI resistance in multiple myeloma. Blood cancer journal 10 (7) (2020)

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Publication Activity (10 Years)

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Li Chen