Mahdi Ghorbani

Publication Activity (10 Years)

Years Active: 2021-2023
Publications (10 Years): 4

Top Topics

Molecular Dynamics Simulations

Top Venues

The Journal of chemical physics

The journal of physical chemistry. B

Journal of computer-aided molecular design

This page only lists publications with an associated author ORCID identifier.

Publications

Mahdi Ghorbani, Bernard R Brooks, Jeffery B Klauda
Conformational Fluctuations in β2-Microglubulin Using Markov State Modeling and Molecular Dynamics. The journal of physical chemistry. B (2023)
Mahdi Ghorbani, Samarjeet Prasad, Jeffery B Klauda, Bernard R Brooks
GraphVAMPNet, using graph neural networks and variational approach to Markov processes for dynamical modeling of biomolecules. The Journal of chemical physics 156 (18) (2022)
Mahdi Ghorbani, Phillip S Hudson, Michael R Jones, Félix Aviat, Rubén Meana-Pañeda, Jeffery B Klauda, Bernard R Brooks
A replica exchange umbrella sampling (REUS) approach to predict host-guest binding free energies in SAMPL8 challenge. Journal of computer-aided molecular design 35 (5) (2021)
Mahdi Ghorbani, Samarjeet Prasad, Jeffery B Klauda, Bernard R Brooks
Variational embedding of protein folding simulations using Gaussian mixture variational autoencoders. The Journal of chemical physics 155 (19) (2021)