Mohammad R K Mofrad

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 40

Top Venues

Bioinformatics (Oxford, England)

Annals of biomedical engineering

Journal of chemical information and modeling

APL bioengineering

University of California Berkeley

University of Toronto (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Berkeley Jan 01 2005

United States

Professor :: Bioengineering and Mechanical Engineering

Massachusetts Institute of Technology Apr 01 2002 - Dec 31 2004

United States

Principal Research Scientist :: Mechanical Engineering and Biological Engineering

Education History

University of Toronto Sep 01 1994 - Dec 15 1999

Canada

PHD :: Mechanical Engineering

Publications

Salmonn Talebi, Siyu Gai, Aaron Sossin, Vivian Zhu, Elizabeth Tong, Mohammad R K Mofrad
Deep Learning for Perfusion Cerebral Blood Flow (CBF) and Volume (CBV) Predictions and Diagnostics. Annals of biomedical engineering 52 (6) (2024)
Andrew Dickson, Mohammad R K Mofrad
Fine-tuning protein embeddings for functional similarity evaluation. Bioinformatics (Oxford, England) 40 (8) (2024)
Ali Gharizadeh, Karim Abbasi, Amin Ghareyazi, Mohammad R K Mofrad, Hamid R Rabiee
HGTDR: Advancing drug repurposing with heterogeneous graph transformers. Bioinformatics (Oxford, England) 40 (7) (2024)
Atsushi Matsuda, Abdullah Mansour, Mohammad R K Mofrad
Deciphering the intrinsically disordered characteristics of the FG-Nups through the lens of polymer physics. Nucleus (Austin, Tex.) 15 (1) (2024)
Andrew Dickson, Mohammad R K Mofrad
Fine-tuning protein embeddings for functional similarity evaluation. Bioinformatics (Oxford, England) 40 (8) (2024)
Ali Gharizadeh, Karim Abbasi, Amin Ghareyazi, Mohammad R K Mofrad, Hamid R Rabiee
HGTDR: Advancing drug repurposing with heterogeneous graph transformers. Bioinformatics (Oxford, England) 40 (7) (2024)
Salmonn Talebi, Siyu Gai, Aaron Sossin, Vivian Zhu, Elizabeth Tong, Mohammad R K Mofrad
Deep Learning for Perfusion Cerebral Blood Flow (CBF) and Volume (CBV) Predictions and Diagnostics. Annals of biomedical engineering 52 (6) (2024)
Salmonn Talebi, Siyu Gai, Aaron Sossin, Vivian Zhu, Elizabeth Tong, Mohammad R K Mofrad
Deep Learning for Perfusion Cerebral Blood Flow (CBF) and Volume (CBV) Predictions and Diagnostics. Annals of biomedical engineering (2024)
Salmonn Talebi, Siyu Gai, Aaron Sossin, Vivian Zhu, Elizabeth Tong, Mohammad R K Mofrad
Deep Learning for Perfusion Cerebral Blood Flow (CBF) and Volume (CBV) Predictions and Diagnostics. Annals of biomedical engineering 52 (6) (2024)
Salmonn Talebi, Siyu Gai, Aaron Sossin, Vivian Zhu, Elizabeth Tong, Mohammad R K Mofrad
Deep Learning for Perfusion Cerebral Blood Flow (CBF) and Volume (CBV) Predictions and Diagnostics. Annals of biomedical engineering 52 (6) (2024)
Andrew Dickson, Ehsaneddin Asgari, Alice C McHardy, Mohammad R K Mofrad
GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotations. Bioinformatics (Oxford, England) 39 (2) (2023)
Mohammad Khavani, Aliyeh Mehranfar, Mohammad R K Mofrad
On the Sensitivity and Affinity of Gold, Silver, and Platinum Surfaces against the SARS-CoV-2 Virus: A Comparative Computational Study. Journal of chemical information and modeling (2023)
Aliyeh Mehranfar, Mohammad Khavani, Mohammad R K Mofrad
Adsorption Process of Various Antimicrobial Peptides on Different Surfaces of Cellulose. ACS applied bio materials 6 (3) (2023)
Amin Valiei, Javad Aminian-Dehkordi, Mohammad R K Mofrad
Gut-on-a-chip models for dissecting the gut microbiology and physiology. APL bioengineering 7 (1) (2023)
Amin Valiei, Javad Aminian-Dehkordi, Mohammad R K Mofrad
Gut-on-a-chip models for dissecting the gut microbiology and physiology. APL bioengineering 7 (1) (2023)
Andrew Dickson, Ehsaneddin Asgari, Alice C McHardy, Mohammad R K Mofrad
GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotations. Bioinformatics (Oxford, England) 39 (2) (2023)
Hesong Han, Albert Vallejo Gracia, Joachim Justad Røise, Lydia Boike, Kristoffer Leon, Ursula Schulze-Gahmen, Michael R Stentzel, Teena Bajaj, Dake Chen, I-Che Li, Maomao He, Kamyar Behrouzi, Zahra Khodabakhshi, Daniel K Nomura, Mohammad R K Mofrad, G Renuka Kumar, Melanie Ott, Niren Murthy
A covalent inhibitor targeting the papain-like protease from SARS-CoV-2 inhibits viral replication. RSC advances 13 (16) (2023)
Aliyeh Mehranfar, Mohammad Khavani, Mohammad R K Mofrad
Adsorption Process of Various Antimicrobial Peptides on Different Surfaces of Cellulose. ACS applied bio materials 6 (3) (2023)
Mohammad Khavani, Aliyeh Mehranfar, Mohammad R K Mofrad
On the Sensitivity and Affinity of Gold, Silver, and Platinum Surfaces against the SARS-CoV-2 Virus: A Comparative Computational Study. Journal of chemical information and modeling 63 (4) (2023)
Mohammad Khavani, Aliyeh Mehranfar, Mohammad R K Mofrad
On the Sensitivity and Affinity of Gold, Silver, and Platinum Surfaces against the SARS-CoV-2 Virus: A Comparative Computational Study. Journal of chemical information and modeling (2023)
Mohammad Khavani, Aliyeh Mehranfar, Mohammad R K Mofrad
On the Sensitivity and Affinity of Gold, Silver, and Platinum Surfaces against the SARS-CoV-2 Virus: A Comparative Computational Study. Journal of chemical information and modeling (2023)
Teena Bajaj, Eddie Wehri, Rahul K Suryawanshi, Elizabeth A King, Kundan Singh Pardeshi, Kamyar Behrouzi, Zahra Khodabakhshi, Ursula Schulze-Gahmen, G Renuka Kumar, Mohammad R K Mofrad, Daniel K Nomura, Melanie Ott, Julia Schaletzky, Niren Murthy
Mercapto-pyrimidines are reversible covalent inhibitors of the papain-like protease (PLpro) and inhibit SARS-CoV-2 (SCoV-2) replication. RSC advances 13 (26) (2023)
Mohammad Khavani, Aliyeh Mehranfar, Mohammad R K Mofrad
On the Sensitivity and Affinity of Gold, Silver, and Platinum Surfaces against the SARS-CoV-2 Virus: A Comparative Computational Study. Journal of chemical information and modeling 63 (4) (2023)
Jonathan P McKinley, Andre R Montes, Maple N Wang, Anuya R Kamath, Gissell Jimenez, Jianhua Lim, Siddharth A Marathe, Mohammad R K Mofrad, Grace D O'Connell
Design of a flexing organ-chip to model in situ loading of the intervertebral disc. Biomicrofluidics 16 (5) (2022)
Yifan Guo, Mohammad R K Mofrad, Adrian Buganza Tepole
On modeling the multiscale mechanobiology of soft tissues: Challenges and progress. Biophysics reviews 3 (3) (2022)
Yifan Guo, Mohammad R K Mofrad, Adrian Buganza Tepole
On modeling the multiscale mechanobiology of soft tissues: Challenges and progress. Biophysics reviews 3 (3) (2022)
Mohammad Khavani, Aliyeh Mehranfar, Mohammad R K Mofrad
Effects of Ionic Liquids on the Stabilization Process of Gold Nanoparticles. The journal of physical chemistry. B 126 (46) (2022)
Atsushi Matsuda, Mohammad R K Mofrad
On the nuclear pore complex and its emerging role in cellular mechanotransduction. APL bioengineering 6 (1) (2022)
Muhammad Harith Bin Zamri, Yoshihiro Ujihara, Masanori Nakamura, Mohammad R K Mofrad, Shukei Sugita
Decoding the Effect of Hydrostatic Pressure on TRPV1 Lower-Gate Conformation by Molecular-Dynamics Simulation. International journal of molecular sciences 23 (13) (2022)
Zeinab Jahed, Nya Domkam, Jessica Ornowski, Ghafar Yerima, Mohammad R K Mofrad
Molecular models of LINC complex assembly at the nuclear envelope. Journal of cell science 134 (12) (2021)
Kathleen M Lennon, Mohammad Soheilypour, Mohaddeseh Peyro, Devin L Wakefield, Grace E Choo, Mohammad R K Mofrad, Tijana Jovanovic Talisman
Characterizing Binding Interactions That Are Essential for Selective Transport through the Nuclear Pore Complex. International journal of molecular sciences 22 (19) (2021)
Joachim Justad Røise, Hesong Han, Jie Li, D Lucas Kerr, Chung Taing, Kamyar Behrouzi, Maomao He, Emily Ruan, Lienna Y Chan, Eli Misael Espinoza, Sören Reinhard, Kanav Thakker, Justin Kwon, Mohammad R K Mofrad, Niren Murthy
Acid-Sensitive Surfactants Enhance the Delivery of Nucleic Acids. Molecular pharmaceutics 19 (1) (2021)
Kirsten M Anderson, Danillo G Augusto, Ravi Dandekar, Hengameh Shams, Chao Zhao, Tasneem Yusufali, Gonzalo Montero-Martín, Wesley M Marin, Neda Nemat-Gorgani, Lisa E Creary, Stacy Caillier, Mohammad R K Mofrad, Peter Parham, Marcelo Aníbal Fernández-Viña, Jorge R Oksenberg, Paul J Norman, Jill A Hollenbach
Killer Cell Immunoglobulin-like Receptor Variants Are Associated with Protection from Symptoms Associated with More Severe Course in Parkinson Disease. Journal of immunology (Baltimore, Md. : 1950) 205 (5) (2020)
Bo Cheng, Wanting Wan, Guoyou Huang, Yuhui Li, Guy M Genin, Mohammad R K Mofrad, Tian Jian Lu, Feng Xu, Min Lin
Nanoscale integrin cluster dynamics controls cellular mechanosensing via FAKY397 phosphorylation. Science advances 6 (10) (2020)
Ehsaneddin Asgari, Alice Carolyn McHardy, Mohammad R K Mofrad
Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX). Scientific reports 9 (1) (2019)
Ali Madani, Jia Rui Ong, Anshul Tibrewal, Mohammad R K Mofrad
Deep echocardiography: data-efficient supervised and semi-supervised deep learning towards automated diagnosis of cardiac disease. NPJ digital medicine 1 (2018)
Amirhossein Arzani, Kristyn S Masters, Mohammad R K Mofrad
Multiscale Systems Biology Model of Calcific Aortic Valve Disease Progression. ACS biomaterials science & engineering 3 (11) (2017)
Ali Madani, Kiavash Garakani, Mohammad R K Mofrad
Molecular mechanics of Staphylococcus aureus adhesin, CNA, and the inhibition of bacterial adhesion by stretching collagen. PloS one 12 (6) (2017)
Hengameh Shams, Mohammad Soheilypour, Mohaddeseh Peyro, Ruhollah Moussavi-Baygi, Mohammad R K Mofrad
Looking "Under the Hood" of Cellular Mechanotransduction with Computational Tools: A Systems Biomechanics Approach across Multiple Scales. ACS biomaterials science & engineering 3 (11) (2017)
Zeinab Jahed, Mohammad Soheilypour, Mohaddeseh Peyro, Mohammad R K Mofrad
The LINC and NPC relationship - it's complicated! Journal of cell science 129 (17) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Mohammad R K Mofrad