Nicholas D Youngblut

Publication Activity (10 Years)

Years Active: 2020-2023
Publications (10 Years): 24

Top Topics

Convolutional Neural Network

Genetic Diversity

Top Venues

PLoS computational biology

Science immunology

Environmental microbiology

This page only lists publications with an associated author ORCID identifier.

Publications

Sara J Clasen, Michael E W Bell, Andrea Borbón, Du-Hwa Lee, Zachariah M Henseler, Jacobo de la Cuesta-Zuluaga, Katarzyna Parys, Jun Zou, Yanling Wang, Veronika Altmannova, Nicholas D Youngblut, John R Weir, Andrew T Gewirtz, Youssef Belkhadir, Ruth E Ley
Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. Science immunology 8 (79) (2023)
Jacobo de la Cuesta-Zuluaga, Kelsey E Huus, Nicholas D Youngblut, Juan S Escobar, Ruth E Ley
Obesity is the main driver of altered gut microbiome functions in the metabolically unhealthy. Gut microbes 15 (2) (2023)
Sara J Clasen, Michael E W Bell, Andrea Borbón, Du-Hwa Lee, Zachariah M Henseler, Jacobo de la Cuesta-Zuluaga, Katarzyna Parys, Jun Zou, Yanling Wang, Veronika Altmannova, Nicholas D Youngblut, John R Weir, Andrew T Gewirtz, Youssef Belkhadir, Ruth E Ley
Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. Science immunology 8 (79) (2023)
Olga Mineeva, Daniel Danciu, Bernhard Schölkopf, Ruth E Ley, Gunnar Rätsch, Nicholas D Youngblut
ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning. PLoS computational biology 19 (5) (2023)
Olga Mineeva, Daniel Danciu, Bernhard Schölkopf, Ruth E Ley, Gunnar Rätsch, Nicholas D Youngblut
ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning. PLoS computational biology 19 (5) (2023)
Olga Mineeva, Daniel Danciu, Bernhard Schölkopf, Ruth E Ley, Gunnar Rätsch, Nicholas D Youngblut
ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning. PLoS computational biology 19 (5) (2023)
Sara J Clasen, Michael E W Bell, Andrea Borbón, Du-Hwa Lee, Zachariah M Henseler, Jacobo de la Cuesta-Zuluaga, Katarzyna Parys, Jun Zou, Yanling Wang, Veronika Altmannova, Nicholas D Youngblut, John R Weir, Andrew T Gewirtz, Youssef Belkhadir, Ruth E Ley
Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. Science immunology 8 (79) (2023)
Sara J Clasen, Michael E W Bell, Andrea Borbón, Du-Hwa Lee, Zachariah M Henseler, Jacobo de la Cuesta-Zuluaga, Katarzyna Parys, Jun Zou, Yanling Wang, Veronika Altmannova, Nicholas D Youngblut, John R Weir, Andrew T Gewirtz, Youssef Belkhadir, Ruth E Ley
Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. Science immunology 8 (79) (2023)
Sara J Clasen, Michael E W Bell, Andrea Borbón, Du-Hwa Lee, Zachariah M Henseler, Jacobo de la Cuesta-Zuluaga, Katarzyna Parys, Jun Zou, Yanling Wang, Veronika Altmannova, Nicholas D Youngblut, John R Weir, Andrew T Gewirtz, Youssef Belkhadir, Ruth E Ley
Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. Science immunology 8 (79) (2023)
Olga Mineeva, Daniel Danciu, Bernhard Schölkopf, Ruth E Ley, Gunnar Rätsch, Nicholas D Youngblut
ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning. PLoS computational biology 19 (5) (2023)
Olga Mineeva, Daniel Danciu, Bernhard Schölkopf, Ruth E Ley, Gunnar Rätsch, Nicholas D Youngblut
ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning. PLoS computational biology 19 (5) (2023)
Taichi A Suzuki, J Liam Fitzstevens, Victor T Schmidt, Hagay Enav, Kelsey E Huus, Mirabeau Mbong Ngwese, Anne Grießhammer, Anne Pfleiderer, Roméo Bayodé Adegbite, Jeannot F Zinsou, Meral Esen, Thirumalaisamy P Velavan, Adegnika Ayola Akim, Song Huu Le, Timothy D Spector, Amanda L Muehlbauer, Nina Marchi, Hyena Kang, Lisa Maier, Ran Blekhman, Laure Segurel, GwangPyo Ko, Nicholas D Youngblut, Peter G Kremsner, Ruth E Ley
Codiversification of gut microbiota with humans. Science (New York, N.Y.) 377 (6612) (2022)
Nicholas D Youngblut, Jacobo de la Cuesta-Zuluaga, Ruth E Ley
Incorporating genome-based phylogeny and functional similarity into diversity assessments helps to resolve a global collection of human gut metagenomes. Environmental microbiology 24 (9) (2022)
Albane Ruaud, Niklas Pfister, Ruth E Ley, Nicholas D Youngblut
Interpreting tree ensemble machine learning models with endoR. PLoS computational biology 18 (12) (2022)
Albane Ruaud, Niklas Pfister, Ruth E Ley, Nicholas D Youngblut
Interpreting tree ensemble machine learning models with endoR. PLoS computational biology 18 (12) (2022)
Albane Ruaud, Niklas Pfister, Ruth E Ley, Nicholas D Youngblut
Interpreting tree ensemble machine learning models with endoR. PLoS computational biology 18 (12) (2022)
Albane Ruaud, Niklas Pfister, Ruth E Ley, Nicholas D Youngblut
Interpreting tree ensemble machine learning models with endoR. PLoS computational biology 18 (12) (2022)
Albane Ruaud, Niklas Pfister, Ruth E Ley, Nicholas D Youngblut
Interpreting tree ensemble machine learning models with endoR. PLoS computational biology 18 (12) (2022)
Samuel E Barnett, Nicholas D Youngblut, Daniel H Buckley
Bacterial community dynamics explain carbon mineralization and assimilation in soils of different land-use history. Environmental microbiology 24 (11) (2022)
Albane Ruaud, Niklas Pfister, Ruth E Ley, Nicholas D Youngblut
Interpreting tree ensemble machine learning models with endoR. PLoS computational biology 18 (12) (2022)
Daphne K Welter, Albane Ruaud, Zachariah M Henseler, Hannah N De Jong, Peter van Coeverden de Groot, Johan Michaux, Linda Gormezano, Jillian L Waters, Nicholas D Youngblut, Ruth E Ley
Free-Living, Psychrotrophic Bacteria of the Genus Psychrobacter Are Descendants of Pathobionts. mSystems 6 (2) (2021)
Nicholas D Youngblut, Georg H Reischer, Silke Dauser, Sophie Maisch, Christian Walzer, Gabrielle Stalder, Andreas H Farnleitner, Ruth E Ley
Vertebrate host phylogeny influences gut archaeal diversity. Nature microbiology 6 (11) (2021)
Jacobo de la Cuesta-Zuluaga, Timothy D Spector, Nicholas D Youngblut, Ruth E Ley
Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut. mSystems 6 (1) (2021)
Nicholas D Youngblut, Jacobo de la Cuesta-Zuluaga, Georg H Reischer, Silke Dauser, Nathalie Schuster, Chris Walzer, Gabrielle Stalder, Andreas H Farnleitner, Ruth E Ley
Large-Scale Metagenome Assembly Reveals Novel Animal-Associated Microbial Genomes, Biosynthetic Gene Clusters, and Other Genetic Diversity. mSystems 5 (6) (2020)