Niklaus J Grünwald (N J Grünwald)

Scopus Author ID ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 44

Top Venues

Phytopathology

Plant disease

PLoS computational biology

Molecular plant-microbe interactions : MPMI

Oregon State University

UC Davis (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Oregon State University

United States

Courtesy Professor :: Dept. Botany & Plant Pathology

USDA ARS, Agricultural Research Service

United States

Research plant pathologist :: Horticultural Crops Research Laboratory

USDA Agricultural Research Service

United States

Research Plant Pathologist

Education History

UC Davis

United States

PHD :: Ecology

UC Davis

United States

BSC :: Plant Science

Publications

Zachary S L Foster, Andrew S Tupper, Caroline M Press, Niklaus J Grünwald
Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data. PLoS computational biology 20 (5) (2024)
Niklaus J Grünwald, Clive H Bock, Jeff H Chang, Alessandra Alves de Souza, Emerson Medeiros Del Ponte, Lindsey J du Toit, Anne E Dorrance, Jeremiah K S Dung, David Hugh Gent, Erica M Goss, Tiffany M Lowe-Power, Laurence V Madden, Frank N Martin, John McDowell, Rachel P Naegele, Neha Potnis, Lina M Quesada-Ocampo, George W Sundin, Lindsey Thiessen, Boris A Vinatzer, Quan Zeng
Open Access and Reproducibility in Plant Pathology Research: Guidelines and Best Practices. Phytopathology 114 (5) (2024)
Zachary S L Foster, Andrew S Tupper, Caroline M Press, Niklaus J Grünwald
Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data. PLoS computational biology 20 (5) (2024)
Niklaus J Grünwald, Clive H Bock, Jeff H Chang, Alessandra Alves de Souza, Emerson Medeiros Del Ponte, Lindsey J du Toit, Anne E Dorrance, Jeremiah K S Dung, David Hugh Gent, Erica M Goss, Tiffany M Lowe-Power, Laurence V Madden, Frank N Martin, John McDowell, Rachel P Naegele, Neha Potnis, Lina M Quesada-Ocampo, George W Sundin, Lindsey Thiessen, Boris A Vinatzer, Quan Zeng
Open Access and Reproducibility in Plant Pathology Research: Guidelines and Best Practices. Phytopathology (2024)
Zachary S L Foster, Andrew S Tupper, Caroline M Press, Niklaus J Grünwald
Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data. PLoS computational biology 20 (5) (2024)
Zachary S L Foster, Andrew S Tupper, Caroline M Press, Niklaus J Grünwald
Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data. PLoS computational biology 20 (5) (2024)
Nicholas C Carleson, Caroline M Press, Niklaus J Grünwald
High-Quality, Phased Genomes of Phytophthora ramorum Clonal Lineages NA1 and EU1. Molecular plant-microbe interactions : MPMI 35 (4) (2022)
Richard C Hamelin, Guillaume J Bilodeau, Renate Heinzelmann, Kelly Hrywkiw, Arnaud Capron, Erika Dort, Angela L Dale, Emilie Giroux, Stacey Kus, Nick C Carleson, Niklaus J Grünwald, Nicolas Feau
Genomic biosurveillance detects a sexual hybrid in the sudden oak death pathogen. Communications biology 5 (1) (2022)
Jared Michael LeBoldus, Sarah M Navarro, Norma Kline, Gabriela Ritokova, Niklaus J Grünwald
Repeated Emergence of Sudden Oak Death in Oregon: Chronology, Impact, and Management. Plant disease (2022)
Alexandra J Weisberg, Marilyn Miller, Walt Ream, Niklaus J Grünwald, Jeff H Chang
Diversification of plasmids in a genus of pathogenic and nitrogen-fixing bacteria. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1842) (2021)
Shankar K Shakya, Niklaus J Grünwald, Valerie J Fieland, Brian J Knaus, Jerry E Weiland, Cristiana Maia, André Drenth, David I Guest, Edward C Y Liew, Colin Crane, Tun-Tschu Chang, Chuen-Hsu Fu, Nguyen Minh Chi, Pham Quang Thu, Bruno Scanu, Eugenio Sanfuentes von Stowasser, Álvaro Durán, Marília Horta Jung, Thomas Jung
Phylogeography of the wide-host range panglobal plant pathogen Phytophthora cinnamomi. Molecular ecology 30 (20) (2021)
Mary Block, Brian J Knaus, Michele S Wiseman, Niklaus J Grünwald, David Hugh Gent
Development of a Diagnostic Assay for Race Differentiation of Podosphaera macularis. Plant disease 105 (4) (2021)
Nicholas C Carleson, Hazel A Daniels, Paul W Reeser, Alan Kanaskie, Sarah M Navarro, Jared Michael LeBoldus, Niklaus J Grünwald
Novel Introductions and Epidemic Dynamics of the Sudden Oak Death Pathogen Phytophthora ramorum in Oregon Forests. Phytopathology 111 (4) (2021)
Jerry E Weiland, Carolyn F Scagel, Niklaus J Grünwald, E Anne Davis, Bryan R Beck
Phytophthora Species Differ in Response to Phosphorous Acid and Mefenoxam for the Management of Phytophthora Root Rot in Rhododendron. Plant disease 105 (5) (2021)
William A Weldon, Brian J Knaus, Niklaus J Grünwald, Joshua S Havill, Mary H Block, David Hugh Gent, Lance E Cadle-Davidson, David M Gadoury
Transcriptome-Derived Amplicon Sequencing Markers Elucidate the U.S. Podosphaera macularis Population Structure Across Feral and Commercial Plantings of Humulus lupulus. Phytopathology 111 (1) (2020)
David Hugh Gent, Briana J Claassen, David M Gadoury, Niklaus J Grünwald, Brian J Knaus, Sebastjan Radišek, William Weldon, Michele S Wiseman, Sierra N Wolfenbarger
Population Diversity and Structure of Podosphaera macularis in the Pacific Northwestern United States and Other Populations. Phytopathology 110 (5) (2020)
David A Rasmussen, Niklaus J Grünwald
Phylogeographic Approaches to Characterize the Emergence of Plant Pathogens. Phytopathology 111 (1) (2020)
Jerry E Weiland, Carolyn F Scagel, Niklaus J Grünwald, E Anne Davis, Bryan R Beck, Zachary S L Foster, Valerie J Fieland
Soilborne Phytophthora and Pythium Diversity From Rhododendron in Propagation, Container, and Field Production Systems of the Pacific Northwest. Plant disease 104 (6) (2020)
Javier F Tabima, Lilah Gonen, Mireia Gomez-Gallego, Preeti Panda, Niklaus J Grünwald, Everett M Hansen, Rebecca McDougal, Jared Michael LeBoldus, Nari M Williams
Molecular Phylogenomics and Population Structure of Phytophthora pluvialis. Phytopathology 111 (1) (2020)
Brian J Knaus, Javier F Tabima, Shankar K Shakya, Howard S Judelson, Niklaus J Grünwald
Genome-Wide Increased Copy Number is Associated with Emergence of Dominant Clones of the Irish Potato Famine Pathogen Phytophthora infestans. mBio 11 (3) (2020)
Alexandra J Weisberg, Edward W Davis, Javier F Tabima, Michael S Belcher, Marilyn Miller, Chih-Horng Kuo, Joyce E Loper, Niklaus J Grünwald, Melodie L Putnam, Jeff H Chang
Unexpected conservation and global transmission of agrobacterial virulence plasmids. Science (New York, N.Y.) 368 (6495) (2020)
Yongzhao Diao, Meredith M Larsen, Zhian N Kamvar, Can Zhang, Shuo Li, Weizhen Wang, Dong Lin, Qin Peng, Brian J Knaus, Zachary S L Foster, Niklaus J Grünwald, Xili Liu
Genetic Differentiation and Clonal Expansion of Chinese Botrytis cinerea Populations from Tomato and Other Crops in China. Phytopathology 110 (2) (2019)
Andrew S Taylor, Brian J Knaus, Niklaus J Grünwald, Treena Burgess
Population Genetic Structure and Cryptic Species of Plasmopara viticola in Australia. Phytopathology 109 (11) (2019)
Jeremiah K S Dung, Brian J Knaus, Henry L S Fellows, Niklaus J Grünwald, Kelly J Vining
Genetic Diversity of Verticillium dahliae Isolates From Mint Detected with Genotyping by Sequencing. Phytopathology 109 (11) (2019)
Javier F Tabima, Niklaus J Grünwald
effectR: An Expandable R Package to Predict Candidate RxLR and CRN Effectors in Oomycetes Using Motif Searches. Molecular plant-microbe interactions : MPMI 32 (9) (2019)
Frank N Martin, Yonghong Zhang, David E L Cooke, Mike D Coffey, Niklaus J Grünwald, William E Fry
Insights into evolving global populations of Phytophthora infestans via new complementary mtDNA haplotype markers and nuclear SSRs. PloS one 14 (1) (2019)
David Hugh Gent, Nanci Adair, Brian J Knaus, Niklaus J Grünwald
Genotyping-by-Sequencing Reveals Fine-Scale Differentiation in Populations of Pseudoperonospora humuli. Phytopathology 109 (10) (2019)
Nicholas C Carleson, Valerie J Fieland, Carolyn F Scagel, Jerry E Weiland, Niklaus J Grünwald
Population Structure of Phytophthora plurivora on Rhododendron in Oregon Nurseries. Plant disease 103 (8) (2019)
Jeff H Chang, Melodie L Putnam, Niklaus J Grünwald, Elizabeth A Savory, Skylar L Fuller, Alexandra J Weisberg
Response to comments on "Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management". eLife 7 (2018)
Jerry E Weiland, Carolyn F Scagel, Niklaus J Grünwald, E Anne Davis, Bryan R Beck, Val J Fieland
Variation in Disease Severity Caused by Phytophthora cinnamomi, P. plurivora, and Pythium cryptoirregulare on Two Rhododendron Cultivars. Plant disease 102 (12) (2018)
Javier F Tabima, Michael D Coffey, Inga A Zazada, Niklaus J Grünwald
Populations of Phytophthora rubi Show Little Differentiation and High Rates of Migration Among States in the Western United States. Molecular plant-microbe interactions : MPMI 31 (6) (2018)
Shankar K Shakya, Meredith M Larsen, Mercedes María Cuenca-Condoy, Héctor Lozoya-Saldaña, Niklaus J Grünwald
Variation in Genetic Diversity of Phytophthora infestans Populations in Mexico from the Center of Origin Outwards. Plant disease 102 (8) (2018)
Zachary S L Foster, Scott Chamberlain, Niklaus J Grünwald
Taxa: An R package implementing data standards and methods for taxonomic data. F1000Research 7 (2018)
Zachary S L Foster, Scott Chamberlain, Niklaus J Grünwald
Taxa: An R package implementing data standards and methods for taxonomic data. F1000Research (2018)
Edward W Davis, Javier F Tabima, Alexandra J Weisberg, Lucas Dantas Lopes, Michele S Wiseman, Michael S Wiseman, Tal Pupko, Michael S Belcher, Aaron J Sechler, Matt A Tancos, Brenda K Schroeder, Timothy D Murray, Douglas G Luster, William L Schneider, Elizabeth E Rogers, Fernando D Andreote, Niklaus J Grünwald, Melodie L Putnam, Jeff H Chang
Evolution of the U.S. Biological Select Agent Rathayibacter toxicus. mBio 9 (4) (2018)
Elizabeth A Savory, Skylar L Fuller, Alexandra J Weisberg, William J Thomas, Michael I Gordon, Danielle M Stevens, Allison L Creason, Michael S Belcher, Maryna Serdani, Michele S Wiseman, Niklaus J Grünwald, Melodie L Putnam, Jeff H Chang
Correction: Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management. eLife 7 (2018)
Zachary S L Foster, Thomas J Sharpton, Niklaus J Grünwald
Metacoder: An R package for visualization and manipulation of community taxonomic diversity data. PLoS computational biology 13 (2) (2017)
Elizabeth A Savory, Skylar L Fuller, Alexandra J Weisberg, William J Thomas, Michael I Gordon, Danielle M Stevens, Allison L Creason, Michael S Belcher, Maryna Serdani, Michele S Wiseman, Niklaus J Grünwald, Melodie L Putnam, Jeff H Chang
Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management. eLife 6 (2017)
Javier F Tabima, Brent A Kronmiller, Caroline M Press, Brett M Tyler, Inga A Zasada, Niklaus J Grünwald
Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae. Molecular plant-microbe interactions : MPMI 30 (10) (2017)
Niklaus J Grünwald, S E Everhart, B J Knaus, Z N Kamvar
Best Practices for Population Genetic Analyses. Phytopathology 107 (9) (2017)
Jianan Wang, Sylvia P Fernández-Pavía, Meredith M Larsen, Edith Garay-Serrano, Rosario Gregorio-Cipriano, Gerardo Rodríguez-Alvarado, Niklaus J Grünwald, Erica M Goss
High levels of diversity and population structure in the potato late blight pathogen at the Mexico centre of origin. Molecular ecology 26 (4) (2017)
Marie-Claude Gagnon, Nicolas Feau, Angela L Dale, Braham Dhillon, Richard C Hamelin, Clive M Brasier, Niklaus J Grünwald, Stephan C Brière, Guillaume J Bilodeau
Development and Validation of Polymorphic Microsatellite Loci for the NA2 Lineage of Phytophthora ramorum from Whole Genome Sequence Data. Plant disease 101 (5) (2017)
Zachariah R Hansen, Brian J Knaus, Javier F Tabima, Caroline M Press, Howard S Judelson, Niklaus J Grünwald, Christine D Smart
SNP-Based Differentiation of Phytophthora infestans Clonal Lineages Using Locked Nucleic Acid Probes and High-Resolution Melt Analysis. Plant disease 100 (7) (2016)
B J Knaus, J F Tabima, C E Davis, H S Judelson, Niklaus J Grünwald
Genomic Analyses of Dominant U.S. Clonal Lineages of Phytophthora infestans Reveals a Shared Common Ancestry for Clonal Lineages US11 and US18 and a Lack of Recently Shared Ancestry Among All Other U.S. Lineages. Phytopathology 106 (11) (2016)
B J Knaus, V J Fieland, K A Graham, Niklaus J Grünwald
Diversity of Foliar Phytophthora Species on Rhododendron in Oregon Nurseries. Plant disease 99 (10) (2015)

Niklaus J Grünwald.css-eqlu8i{font-size:small;padding-left:4px;} (N J Grünwald)

Publication Activity (10 Years)

Top Topics

Top Venues

Niklaus J Grünwald (N J Grünwald)