Pemra Ozbek Sarica (Pemra Ozbek)

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 10

Top Topics

Molecular Dynamics Simulations

Machine Learning

Top Venues

European journal of immunology

Journal of computer-aided molecular design

Omics : a journal of integrative biology

Molecular biology and evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Semra Melis Soyer, Pemra Ozbek Sarica, Ceyda Kasavi
Lung Adenocarcinoma Systems Biomarker and Drug Candidates Identified by Machine Learning, Gene Expression Data, and Integrative Bioinformatics Pipeline. Omics : a journal of integrative biology 28 (8) (2024)
Semra Melis Soyer, Pemra Ozbek Sarica, Ceyda Kasavi
Lung Adenocarcinoma Systems Biomarker and Drug Candidates Identified by Machine Learning, Gene Expression Data, and Integrative Bioinformatics Pipeline. Omics : a journal of integrative biology (2024)
A W Peshala Amarajeewa, Aslihan Özcan, Alveena Mukhtiar, Xu Ren, Qianyu Wang, Pemra Ozbek Sarica, Malgorzata A Garstka, Onur Serçinoğlu
Polymorphism in F pocket affects peptide selection and stability of type 1 diabetes-associated HLA-B39 allotypes. European journal of immunology 54 (6) (2024)
A W Peshala Amarajeewa, Aslihan Özcan, Alveena Mukhtiar, Xu Ren, Qianyu Wang, Pemra Ozbek Sarica, Malgorzata A Garstka, Onur Serçinoğlu
Polymorphism in F pocket affects peptide selection and stability of type 1 diabetes-associated HLA-B39 allotypes. European journal of immunology (2024)
Shabnam Mohammadi, Halil İbrahim Özdemir, Pemra Ozbek Sarica, Fidan Sumbul, Josefin Stiller, Yuan Deng, Andrew J Crawford, Hannah M Rowland, Jay F Storz, Peter Andolfatto, Susanne Dobler
Epistatic effects between amino acid insertions and substitutions mediate toxin-resistance of vertebrate Na+, K+-ATPases. Molecular biology and evolution (2022)
Fatma Gizem Avci, Ilgaz Tastekil, Amit Jaisi, Pemra Ozbek Sarica, Berna Sariyar Akbulut
A review on the mechanistic details of OXA enzymes of ESKAPE pathogens. Pathogens and global health (2022)
Elif Naz Bingöl, Onur Serçinoğlu, Pemra Ozbek Sarica
Unraveling the Allosteric Communication Mechanisms in T-Cell Receptor-Peptide-Loaded Major Histocompatibility Complex Dynamics Using Molecular Dynamics Simulations: An Approach Based on Dynamic Cross Correlation Maps and Residue Interaction Energy Calculations. Journal of chemical information and modeling 61 (5) (2021)
Metin Yazar, Pemra Ozbek Sarica
Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy. Journal of computer-aided molecular design 34 (9) (2020)
Onur Serçinoğlu, Pemra Ozbek Sarica
Sequence-structure-function relationships in class I MHC: A local frustration perspective. PloS one 15 (5) (2020)
Onur Serçinoğlu, Gülin Özcan, Zeynep Kutlu Kabaş, Pemra Ozbek Sarica
A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis. Journal of computer-aided molecular design 30 (7) (2016)