Pierre Baldi (P Baldi)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 34

Top Topics

Pseudomonas Aeruginosa

Machine Learning

Embryonic Stem Cells

Top Venues

Journal of chemical information and modeling

Nature communications

Science advances

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Mohammadamin Tavakoli, Ryan J Miller, Mirana Claire Angel, Michael A Pfeiffer, Eugene S Gutman, Aaron D Mood, David L Van Vranken, Pierre Baldi
PMechDB: A Public Database of Elementary Polar Reaction Steps. Journal of chemical information and modeling 64 (6) (2024)
Mohammadamin Tavakoli, Ryan J Miller, Mirana Claire Angel, Michael A Pfeiffer, Eugene S Gutman, Aaron D Mood, David L Van Vranken, Pierre Baldi
PMechDB: A Public Database of Elementary Polar Reaction Steps. Journal of chemical information and modeling 64 (6) (2024)
Mohammadamin Tavakoli, Ryan J Miller, Mirana Claire Angel, Michael A Pfeiffer, Eugene S Gutman, Aaron D Mood, David L Van Vranken, Pierre Baldi
PMechDB: A Public Database of Elementary Polar Reaction Steps. Journal of chemical information and modeling (2024)
Ashley A Keiser, Tri N Dong, Enikö A Kramár, Christopher W Butler, Siwei Chen, Dina P Matheos, Jacob S Rounds, Alyssa Rodriguez, Joy H Beardwood, Agatha S Augustynski, Ameer Al-Shammari, Yasaman Alaghband, Vanessa Alizo Vera, Nicole C Berchtold, Sharmin Shanur, Pierre Baldi, Carl W Cotman, Marcelo A Wood
Specific exercise patterns generate an epigenetic molecular memory window that drives long-term memory formation and identifies ACVR1C as a bidirectional regulator of memory in mice. Nature communications 15 (1) (2024)
Ashley A Keiser, Tri N Dong, Enikö A Kramár, Christopher W Butler, Siwei Chen, Dina P Matheos, Jacob S Rounds, Alyssa Rodriguez, Joy H Beardwood, Agatha S Augustynski, Ameer Al-Shammari, Yasaman Alaghband, Vanessa Alizo Vera, Nicole C Berchtold, Sharmin Shanur, Pierre Baldi, Carl W Cotman, Marcelo A Wood
Specific exercise patterns generate an epigenetic molecular memory window that drives long-term memory formation and identifies ACVR1C as a bidirectional regulator of memory in mice. Nature communications 15 (1) (2024)
Mohammadamin Tavakoli, Ryan J Miller, Mirana Claire Angel, Michael A Pfeiffer, Eugene S Gutman, Aaron D Mood, David L Van Vranken, Pierre Baldi
PMechDB: A Public Database of Elementary Polar Reaction Steps. Journal of chemical information and modeling 64 (6) (2024)
Ashley A Keiser, Tri N Dong, Enikö A Kramár, Christopher W Butler, Siwei Chen, Dina P Matheos, Jacob S Rounds, Alyssa Rodriguez, Joy H Beardwood, Agatha S Augustynski, Ameer Al-Shammari, Yasaman Alaghband, Vanessa Alizo Vera, Nicole C Berchtold, Sharmin Shanur, Pierre Baldi, Carl W Cotman, Marcelo A Wood
Specific exercise patterns generate an epigenetic molecular memory window that drives long-term memory formation and identifies ACVR1C as a bidirectional regulator of memory in mice. Nature communications 15 (1) (2024)
Mohammadamin Tavakoli, Ryan J Miller, Mirana Claire Angel, Michael A Pfeiffer, Eugene S Gutman, Aaron D Mood, David L Van Vranken, Pierre Baldi
PMechDB: A Public Database of Elementary Polar Reaction Steps. Journal of chemical information and modeling 64 (6) (2024)
Mohammadamin Tavakoli, Ryan J Miller, Mirana Claire Angel, Michael A Pfeiffer, Eugene S Gutman, Aaron D Mood, David L Van Vranken, Pierre Baldi
PMechDB: A Public Database of Elementary Polar Reaction Steps. Journal of chemical information and modeling 64 (6) (2024)
Ashley A Keiser, Tri N Dong, Enikö A Kramár, Christopher W Butler, Siwei Chen, Dina P Matheos, Jacob S Rounds, Alyssa Rodriguez, Joy H Beardwood, Agatha S Augustynski, Ameer Al-Shammari, Yasaman Alaghband, Vanessa Alizo Vera, Nicole C Berchtold, Sharmin Shanur, Pierre Baldi, Carl W Cotman, Marcelo A Wood
Specific exercise patterns generate an epigenetic molecular memory window that drives long-term memory formation and identifies ACVR1C as a bidirectional regulator of memory in mice. Nature communications 15 (1) (2024)
Mohammadamin Tavakoli, Yin Ting T Chiu, Pierre Baldi, Annmarie G Carlton, David L Van Vranken
RMechDB: A Public Database of Elementary Radical Reaction Steps. Journal of chemical information and modeling 63 (4) (2023)
Muntaha Samad, Mirana Angel, Joseph Rinehart, Yuzo Kanomata, Pierre Baldi, Maxime Cannesson
Medical Informatics Operating Room Vitals and Events Repository (MOVER): a public-access operating room database. JAMIA open 6 (4) (2023)
Mohammadamin Tavakoli, Yin Ting T Chiu, Pierre Baldi, Annmarie G Carlton, David L Van Vranken
RMechDB: A Public Database of Elementary Radical Reaction Steps. Journal of chemical information and modeling 63 (4) (2023)
Mohammadamin Tavakoli, Yin Ting T Chiu, Pierre Baldi, Annmarie G Carlton, David L Van Vranken
RMechDB: A Public Database of Elementary Radical Reaction Steps. Journal of chemical information and modeling 63 (4) (2023)
Mohammadamin Tavakoli, Yin Ting T Chiu, Pierre Baldi, Annmarie G Carlton, David L Van Vranken
RMechDB: A Public Database of Elementary Radical Reaction Steps. Journal of chemical information and modeling (2023)
Mohammadamin Tavakoli, Yin Ting T Chiu, Pierre Baldi, Annmarie G Carlton, David L Van Vranken
RMechDB: A Public Database of Elementary Radical Reaction Steps. Journal of chemical information and modeling 63 (4) (2023)
Muntaha Samad, Forest Agostinelli, Tomoki Sato, Kohei Shimaji, Pierre Baldi
CircadiOmics: circadian omic web portal. Nucleic acids research (2022)
Babak Shahbaba, Lingge Li, Forest Agostinelli, Mansi Saraf, Keiland W Cooper, Derenik Haghverdian, Gabriel A Elias, Pierre Baldi, Norbert J Fortin
Hippocampal ensembles represent sequential relationships among an extended sequence of nonspatial events. Nature communications 13 (1) (2022)
Whitney E England, Jingtian Wang, Siwei Chen, Pierre Baldi, Ryan A Flynn, Robert C Spitale
An atlas of posttranslational modifications on RNA binding proteins. Nucleic acids research 50 (8) (2022)
Mohammadamin Tavakoli, Aaron Mood, David Van Vranken, Pierre Baldi
Quantum Mechanics and Machine Learning Synergies: Graph Attention Neural Networks to Predict Chemical Reactivity. Journal of chemical information and modeling 62 (9) (2022)
Siwei Chen, Gregor Urban, Pierre Baldi
Weakly Supervised Polyp Segmentation in Colonoscopy Images Using Deep Neural Networks. Journal of imaging 8 (5) (2022)
Paul Petrus, Jacob G Smith, Kevin Brian Koronowski, Siwei Chen, Tomoki Sato, Carolina Magdalen Greco, Thomas Mortimer, Patrick-Simon Welz, Valentina M Zinna, Kohei Shimaji, Marlene Cervantes, Daniela Punzo, Pierre Baldi, Pura Muñoz-Cánoves, Paolo Sassone-Corsi, Salvador Aznar Benitah
The central clock suffices to drive the majority of circulatory metabolic rhythms. Science advances 8 (26) (2022)
Roudabeh Vakil Monfared, Wedad Alhassen, Tri Minh Truong, Michael Angelo Maglalang Gonzales, Vincent Vachirakorntong, Siwei Chen, Pierre Baldi, Olivier Civelli, Amal Alachkar
Transcriptome Profiling of Dysregulated GPCRs Reveals Overlapping Patterns across Psychiatric Disorders and Age-Disease Interactions. Cells 10 (11) (2021)
Pierre Baldi
Call for a Public Open Database of All Chemical Reactions. Journal of chemical information and modeling (2021)
Carolina Magdalen Greco, Kevin Brian Koronowski, Jacob G Smith, Jiejun Shi, Paolo Kunderfranco, Roberta Carriero, Siwei Chen, Muntaha Samad, Patrick-Simon Welz, Valentina M Zinna, Thomas Mortimer, Sung Kook Chun, Kohei Shimaji, Tomoki Sato, Paul Petrus, Arun Kumar, Mireia Vaca-Dempere, Oleg Deryagin, Cassandra Van, José Manuel Monroy Kuhn, Dominik Lutter, Marcus M Seldin, Selma Masri, Weibo Xie, Pierre Baldi, Kenneth Allen Dyar, Pura Muñoz-Cánoves, Salvador Aznar Benitah, Paolo Sassone-Corsi
Integration of feeding behavior by the liver circadian clock reveals network dependency of metabolic rhythms. Science advances 7 (39) (2021)
Karen Brami-Cherrier, Robert G Lewis, Marlene Cervantes, Yu Liu, Paola Tognini, Pierre Baldi, Paolo Sassone-Corsi, Emiliana Borrelli
Cocaine-mediated circadian reprogramming in the striatum through dopamine D2R and PPARγ activation. Nature communications 11 (1) (2020)
Paola Tognini, Muntaha Samad, Kenichiro Kinouchi, Yu Liu, Jean-Christophe Helbling, Marie-Pierre Moisan, Kristin L Eckel-Mahan, Pierre Baldi, Paolo Sassone-Corsi
Reshaping circadian metabolism in the suprachiasmatic nucleus and prefrontal cortex by nutritional challenge. Proceedings of the National Academy of Sciences of the United States of America 117 (47) (2020)
Mehran J Umerani, Preeta Pratakshya, Atrouli Chatterjee, Juana A Cerna Sanchez, Ho Shin Kim, Gregor Ilc, Matic Kovačič, Christophe Magnan, Benedetta Marmiroli, Barbara Sartori, Albert L Kwansa, Helen Orins, Andrew W Bartlett, Erica M Leung, Zhijing Feng, Kyle L Naughton, Brenna Norton-Baker, Long Phan, James Long, Alex Allevato, Jessica E Leal-Cruz, Qiyin Lin, Pierre Baldi, Sigrid Bernstorff, Janez Plavec, Yaroslava G Yingling, Alon A Gorodetsky
Structure, self-assembly, and properties of a truncated reflectin variant. Proceedings of the National Academy of Sciences of the United States of America (2020)
Carolina Magdalen Greco, Marlene Cervantes, Jean-Michel Fustin, Kakeru Ito, Nicholas Ceglia, Muntaha Samad, Jiejun Shi, Kevin Brian Koronowski, Ignasi Forne, Suman Ranjit, Jonathan Gaucher, Kenichiro Kinouchi, Rika Kojima, Enrico Gratton, Weibo Xie, Pierre Baldi, Axel Imhof, Hitoshi Okamura, Paolo Sassone-Corsi
S-adenosyl-l-homocysteine hydrolase links methionine metabolism to the circadian clock and chromatin remodeling. Science advances 6 (51) (2020)
William John Thrift, Sasha Ronaghi, Muntaha Samad, Hong Wei, Dean Gia Nguyen, Antony Superio Cabuslay, Chloe E Groome, Peter Joseph Santiago, Pierre Baldi, Allon I Hochbaum, Regina Ragan
Deep Learning Analysis of Vibrational Spectra of Bacterial Lysate for Rapid Antimicrobial Susceptibility Testing. ACS nano 14 (11) (2020)
Yu-Han Chen, Ching-Chieh Su, Wu Deng, Leslie F Lock, Peter J Donovan, Matthew A Kayala, Pierre Baldi, Hsiao-Chen Lee, Yumay Chen, Ping H Wang
Mitochondrial Akt Signaling Modulated Reprogramming of Somatic Cells. Scientific reports 9 (1) (2019)
Cuong Quoc Nguyen, William John Thrift, Arunima Bhattacharjee, Saba Ranjbar, Tara Gallagher, Mahsa Darvishzadeh-Varcheie, Robert Noboru Sanderson, Filippo Capolino, Katrine Whiteson, Pierre Baldi, Allon I Hochbaum, Regina Ragan
Longitudinal Monitoring of Biofilm Formation via Robust Surface-Enhanced Raman Scattering Quantification of Pseudomonas aeruginosa-Produced Metabolites. ACS applied materials & interfaces 10 (15) (2018)
Peter Chang, Jack Grinband, Brent D Weinberg, Michelle D Bardis, M Khy, G Cadena, Min-Ying Lydia Su, Soonmee Cha, Christopher G Filippi, Daniela A Bota, Pierre Baldi, Laila M Poisson, Rajan Jain, Daniel S Chow
Deep-Learning Convolutional Neural Networks Accurately Classify Genetic Mutations in Gliomas. AJNR. American journal of neuroradiology 39 (7) (2018)
Gregor Urban, Niranjan Subrahmanya, Pierre Baldi
Inner and Outer Recursive Neural Networks for Chemoinformatics Applications. Journal of chemical information and modeling 58 (2) (2018)