Pilar Cossio

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 15

Top Topics

Molecular Dynamics Simulations

Convolutional Neural Network

Atomic Force Microscopy

Single Molecule

Top Venues

Journal of chemical theory and computation

Journal of chemical information and modeling

The journal of physical chemistry letters

This page only lists publications with an associated author ORCID identifier.

Publications

Nicodemo Mazzaferro, Subarna Sasmal, Pilar Cossio, Glen M Hocky
Good Rates From Bad Coordinates: The Exponential Average Time-dependent Rate Approach. Journal of chemical theory and computation 20 (14) (2024)
Nicodemo Mazzaferro, Subarna Sasmal, Pilar Cossio, Glen M Hocky
Good Rates From Bad Coordinates: The Exponential Average Time-dependent Rate Approach. Journal of chemical theory and computation 20 (14) (2024)
Nicodemo Mazzaferro, Subarna Sasmal, Pilar Cossio, Glen M Hocky
Good Rates From Bad Coordinates: The Exponential Average Time-dependent Rate Approach. Journal of chemical theory and computation 20 (14) (2024)
Nicodemo Mazzaferro, Subarna Sasmal, Pilar Cossio, Glen M Hocky
Good Rates From Bad Coordinates: The Exponential Average Time-dependent Rate Approach. Journal of chemical theory and computation (2024)
Wai Shing Tang, David Silva-Sánchez, Julian Giraldo-Barreto, Bob Carpenter, Sonya M Hanson, Alex H Barnett, Erik H Thiede, Pilar Cossio
Ensemble Reweighting Using Cryo-EM Particle Images. The journal of physical chemistry. B (2023)
Pilar Cossio, Glen M Hocky
Catching actin proteins in action. Nature 611 (7935) (2022)
Karen Palacio-Rodríguez, Hadrien Vroylandt, Lukas S Stelzl, Fabio Pietrucci, Gerhard Hummer, Pilar Cossio
Transition Rates and Efficiency of Collective Variables from Time-Dependent Biased Simulations. The journal of physical chemistry letters 13 (32) (2022)
Cristian Rocha-Roa, Juan David Orjuela, Chad Leidy, Pilar Cossio, Camilo Aponte-Santamaría
Cardiolipin prevents pore formation in phosphatidylglycerol bacterial membrane models. FEBS letters 595 (21) (2021)
Rodrigo Ochoa, Pilar Cossio
PepFun: Open Source Protocols for Peptide-Related Computational Analysis. Molecules (Basel, Switzerland) 26 (6) (2021)
Isaias Lans, Ernesto Anoz-Carbonell, Karen Palacio-Rodríguez, José Antonio Aínsa, Milagros Medina, Pilar Cossio
In silico discovery and biological validation of ligands of FAD synthase, a promising new antimicrobial target. PLoS computational biology 16 (8) (2020)
Pilar Cossio
Need for Cross-Validation of Single Particle Cryo-EM. Journal of chemical information and modeling 60 (5) (2020)
Isaias Lans, Karen Palacio-Rodríguez, Claudio N Cavasotto, Pilar Cossio
Flexi-pharma: a molecule-ranking strategy for virtual screening using pharmacophores from ligand-free conformational ensembles. Journal of computer-aided molecular design 34 (10) (2020)
Karen Palacio-Rodríguez, Isaias Lans, Claudio N Cavasotto, Pilar Cossio
Exponential consensus ranking improves the outcome in docking and receptor ensemble docking. Scientific reports 9 (1) (2019)
Rodrigo Ochoa, Alessandro Laio, Pilar Cossio
Predicting the Affinity of Peptides to Major Histocompatibility Complex Class II by Scoring Molecular Dynamics Simulations. Journal of chemical information and modeling 59 (8) (2019)
Roberto Covino, Michael T Woodside, Gerhard Hummer, Attila Szabo, Pilar Cossio
Molecular free energy profiles from force spectroscopy experiments by inversion of observed committors. The Journal of chemical physics 151 (15) (2019)