Ryuichi Nishihama

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 48

Top Venues

Plant & cell physiology

Nature plants

Nature communications

Communications biology

Kyoto University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Kyoto University Sep 01 2011

Japan

Associate Professor :: Graduate School of Biostudies

Publications

Saashia Fuji, Shota Yamauchi, Naoyuki Sugiyama, Takayuki Kohchi, Ryuichi Nishihama, Ken-Ichiro Shimazaki, Atsushi Takemiya
Light-induced stomatal opening requires phosphorylation of the C-terminal autoinhibitory domain of plasma membrane H + -ATPase. Nature communications 15 (1) (2024)
Yu-Ling Hung, Syuan-Fei Hong, Wei-Lun Wei, Shiuan Cheng, Jia-Zhen Yu, Veny Tjita, Qian-Yuan Yong, Ryuichi Nishihama, Takayuki Kohchi, John Bowman, Yuan-Chi Chien, Yen-Hsin Chiu, Ho-Chun Yang, Mei-Yeh Jade Lu, Zhao-Jun Pan, Chun-Neng Wang, Shih-Shun Lin
Dual regulation of cytochrome P450 gene expression by two distinct small RNAs, a novel tasiRNA and miRNA, in Marchantia polymorpha. Plant & cell physiology (2024)
Tomoyuki Furuya, Natsumi Saegusa, Shohei Yamaoka, Yuki Tomoita, Naoki Minamino, Masaki Niwa, Keisuke Inoue, Chiaki Yamamoto, Kazuki Motomura, Shunji Shimadzu, Ryuichi Nishihama, Kimitsune Ishizaki, Takashi Ueda, Hidehiro Fukaki, Takayuki Kohchi, Hiroo Fukuda, Masahiro Kasahara, Takashi Araki, Yuki Kondo
Publisher Correction: A non-canonical BZR/BES transcription factor regulates the development of haploid reproductive organs in Marchantia polymorpha. Nature plants (2024)
Mengyao Wang, Hiromitsu Tabeta, Kinuka Ohtaka, Ayuko Kuwahara, Ryuichi Nishihama, Toshiki Ishikawa, Kiminori Toyooka, Mayuko Sato, Mayumi Wakazaki, Hiromichi Akashi, Hiroshi Tsugawa, Tsubasa Shoji, Yozo Okazaki, Keisuke Yoshida, Ryoichi Sato, Ali Ferjani, Takayuki Kohchi, Masami Yokota Hirai
The phosphorylated pathway of serine biosynthesis affects sperm, embryo, and sporophyte development, and metabolism in Marchantia polymorpha. Communications biology 7 (1) (2024)
Mengyao Wang, Hiromitsu Tabeta, Kinuka Ohtaka, Ayuko Kuwahara, Ryuichi Nishihama, Toshiki Ishikawa, Kiminori Toyooka, Mayuko Sato, Mayumi Wakazaki, Hiromichi Akashi, Hiroshi Tsugawa, Tsubasa Shoji, Yozo Okazaki, Keisuke Yoshida, Ryoichi Sato, Ali Ferjani, Takayuki Kohchi, Masami Yokota Hirai
The phosphorylated pathway of serine biosynthesis affects sperm, embryo, and sporophyte development, and metabolism in Marchantia polymorpha. Communications biology 7 (1) (2024)
Tomoyuki Furuya, Natsumi Saegusa, Shohei Yamaoka, Yuki Tomoita, Naoki Minamino, Masaki Niwa, Keisuke Inoue, Chiaki Yamamoto, Kazuki Motomura, Shunji Shimadzu, Ryuichi Nishihama, Kimitsune Ishizaki, Takashi Ueda, Hidehiro Fukaki, Takayuki Kohchi, Hiroo Fukuda, Masahiro Kasahara, Takashi Araki, Yuki Kondo
A non-canonical BZR/BES transcription factor regulates the development of haploid reproductive organs in Marchantia polymorpha. Nature plants 10 (5) (2024)
Saashia Fuji, Shota Yamauchi, Naoyuki Sugiyama, Takayuki Kohchi, Ryuichi Nishihama, Ken-Ichiro Shimazaki, Atsushi Takemiya
Light-induced stomatal opening requires phosphorylation of the C-terminal autoinhibitory domain of plasma membrane H + -ATPase. Nature communications 15 (1) (2024)
Tomoaki Kajiwara, Motoki Miyazaki, Shohei Yamaoka, Yoshihiro Yoshitake, Yukiko Yasui, Ryuichi Nishihama, Takayuki Kohchi
Transcription of the Antisense Long Non-Coding RNA, SUPPRESSOR OF FEMINIZATION, Represses Expression of the Female-Promoting Gene FEMALE GAMETOPHYTE MYB in the Liverwort Marchantia polymorpha. Plant & cell physiology 65 (3) (2024)
Mengyao Wang, Hiromitsu Tabeta, Kinuka Ohtaka, Ayuko Kuwahara, Ryuichi Nishihama, Toshiki Ishikawa, Kiminori Toyooka, Mayuko Sato, Mayumi Wakazaki, Hiromichi Akashi, Hiroshi Tsugawa, Tsubasa Shoji, Yozo Okazaki, Keisuke Yoshida, Ryoichi Sato, Ali Ferjani, Takayuki Kohchi, Masami Yokota Hirai
The phosphorylated pathway of serine biosynthesis affects sperm, embryo, and sporophyte development, and metabolism in Marchantia polymorpha. Communications biology 7 (1) (2024)
Mengyao Wang, Hiromitsu Tabeta, Kinuka Ohtaka, Ayuko Kuwahara, Ryuichi Nishihama, Toshiki Ishikawa, Kiminori Toyooka, Mayuko Sato, Mayumi Wakazaki, Hiromichi Akashi, Hiroshi Tsugawa, Tsubasa Shoji, Yozo Okazaki, Keisuke Yoshida, Ryoichi Sato, Ali Ferjani, Takayuki Kohchi, Masami Yokota Hirai
The phosphorylated pathway of serine biosynthesis affects sperm, embryo, and sporophyte development, and metabolism in Marchantia polymorpha. Communications biology 7 (1) (2024)
Tomoyuki Furuya, Natsumi Saegusa, Shohei Yamaoka, Yuki Tomoita, Naoki Minamino, Masaki Niwa, Keisuke Inoue, Chiaki Yamamoto, Kazuki Motomura, Shunji Shimadzu, Ryuichi Nishihama, Kimitsune Ishizaki, Takashi Ueda, Hidehiro Fukaki, Takayuki Kohchi, Hiroo Fukuda, Masahiro Kasahara, Takashi Araki, Yuki Kondo
A non-canonical BZR/BES transcription factor regulates the development of haploid reproductive organs in Marchantia polymorpha. Nature plants (2024)
Tomoyuki Furuya, Natsumi Saegusa, Shohei Yamaoka, Yuki Tomoita, Naoki Minamino, Masaki Niwa, Keisuke Inoue, Chiaki Yamamoto, Kazuki Motomura, Shunji Shimadzu, Ryuichi Nishihama, Kimitsune Ishizaki, Takashi Ueda, Hidehiro Fukaki, Takayuki Kohchi, Hiroo Fukuda, Masahiro Kasahara, Takashi Araki, Yuki Kondo
A non-canonical BZR/BES transcription factor regulates the development of haploid reproductive organs in Marchantia polymorpha. Nature plants (2024)
Tomoaki Kajiwara, Motoki Miyazaki, Shohei Yamaoka, Yoshihiro Yoshitake, Yukiko Yasui, Ryuichi Nishihama, Takayuki Kohchi
Transcription of the Antisense Long Non-Coding RNA, SUPPRESSOR OF FEMINIZATION, Represses Expression of the Female-Promoting Gene FEMALE GAMETOPHYTE MYB in the Liverwort Marchantia polymorpha. Plant & cell physiology 65 (3) (2024)
Tomoyuki Furuya, Natsumi Saegusa, Shohei Yamaoka, Yuki Tomoita, Naoki Minamino, Masaki Niwa, Keisuke Inoue, Chiaki Yamamoto, Kazuki Motomura, Shunji Shimadzu, Ryuichi Nishihama, Kimitsune Ishizaki, Takashi Ueda, Hidehiro Fukaki, Takayuki Kohchi, Hiroo Fukuda, Masahiro Kasahara, Takashi Araki, Yuki Kondo
A non-canonical BZR/BES transcription factor regulates the development of haploid reproductive organs in Marchantia polymorpha. Nature plants 10 (5) (2024)
Saashia Fuji, Shota Yamauchi, Naoyuki Sugiyama, Takayuki Kohchi, Ryuichi Nishihama, Ken-Ichiro Shimazaki, Atsushi Takemiya
Light-induced stomatal opening requires phosphorylation of the C-terminal autoinhibitory domain of plasma membrane H + -ATPase. Nature communications 15 (1) (2024)
Yoshiko Yamamoto-Negi, Takeshi Higa, Aino Komatsu, Kanta Sasaki, Kimitsune Ishizaki, Ryuichi Nishihama, Eiji Gotoh, Takayuki Kohchi, Noriyuki Suetsugu
A kinesin-like protein, KAC, is required for light-induced and actin-based chloroplast movement in Marchantia polymorpha. Plant & cell physiology (2024)
Tomoaki Kajiwara, Motoki Miyazaki, Shohei Yamaoka, Yoshihiro Yoshitake, Yukiko Yasui, Ryuichi Nishihama, Takayuki Kohchi
Transcription of the Antisense Long Non-Coding RNA, SUPPRESSOR OF FEMINIZATION, Represses Expression of the Female-Promoting Gene FEMALE GAMETOPHYTE MYB in the Liverwort Marchantia polymorpha. Plant & cell physiology 65 (3) (2024)
Tomoyuki Furuya, Natsumi Saegusa, Shohei Yamaoka, Yuki Tomoita, Naoki Minamino, Masaki Niwa, Keisuke Inoue, Chiaki Yamamoto, Kazuki Motomura, Shunji Shimadzu, Ryuichi Nishihama, Kimitsune Ishizaki, Takashi Ueda, Hidehiro Fukaki, Takayuki Kohchi, Hiroo Fukuda, Masahiro Kasahara, Takashi Araki, Yuki Kondo
A non-canonical BZR/BES transcription factor regulates the development of haploid reproductive organs in Marchantia polymorpha. Nature plants (2024)
Tomoaki Kajiwara, Motoki Miyazaki, Shohei Yamaoka, Yoshihiro Yoshitake, Yukiko Yasui, Ryuichi Nishihama, Takayuki Kohchi
Transcription of the antisense long non-coding RNA, SUPPRESSOR OF FEMINIZATION, represses expression of the female-promoting gene FEMALE GAMETOPHYTE MYB in the liverwort Marchantia polymorpha. Plant & cell physiology (2024)
Tomoyuki Furuya, Natsumi Saegusa, Shohei Yamaoka, Yuki Tomoita, Naoki Minamino, Masaki Niwa, Keisuke Inoue, Chiaki Yamamoto, Kazuki Motomura, Shunji Shimadzu, Ryuichi Nishihama, Kimitsune Ishizaki, Takashi Ueda, Hidehiro Fukaki, Takayuki Kohchi, Hiroo Fukuda, Masahiro Kasahara, Takashi Araki, Yuki Kondo
A non-canonical BZR/BES transcription factor regulates the development of haploid reproductive organs in Marchantia polymorpha. Nature plants 10 (5) (2024)
Syuan-Fei Hong, Wei-Lun Wei, Zhao-Jun Pan, Jia-Zhen Yu, Shiuan Cheng, Yu-Ling Hung, Veny Tjita, Hao-Ching Wang, Aino Komatsu, Ryuichi Nishihama, Takayuki Kohchi, Ho-Ming Chen, Wan-Chieh Chen, Jing-Chi Lo, Yen-Hsin Chiu, Ho-Chun Yang, Mei-Yeh Lu, Li-Yu Daisy Liu, Shih-Shun Lin
Molecular insights into MpAGO1 and its regulatory miRNA, miR11707, in the high-temperature acclimation of Marchantia polymorpha. Plant & cell physiology (2024)
Saashia Fuji, Shota Yamauchi, Naoyuki Sugiyama, Takayuki Kohchi, Ryuichi Nishihama, Ken-Ichiro Shimazaki, Atsushi Takemiya
Light-induced stomatal opening requires phosphorylation of the C-terminal autoinhibitory domain of plasma membrane H + -ATPase. Nature communications 15 (1) (2024)
Yu-Ling Hung, Syuan-Fei Hong, Wei-Lun Wei, Shiuan Cheng, Jia-Zhen Yu, Veny Tjita, Qian-Yuan Yong, Ryuichi Nishihama, Takayuki Kohchi, John L Bowman, Yuan-Chi Chien, Yen-Hsin Chiu, Ho-Chun Yang, Mei-Yeh Jade Lu, Zhao-Jun Pan, Chun-Neng Wang, Shih-Shun Lin
Dual Regulation of Cytochrome P450 Gene Expression by Two Distinct Small RNAs, a Novel tasiRNA and miRNA, in Marchantia polymorpha. Plant & cell physiology 65 (7) (2024)
Kenta C Moriya, Makoto Shirakawa, Jeanne Loue-Manifel, Yoriko Matsuda, Yen-Ting Lu, Kentaro Tamura, Yoshito Oka, Tomonao Matsushita, Ikuko Hara-Nishimura, Gwyneth C Ingram, Ryuichi Nishihama, Justin Goodrich, Takayuki Kohchi, Tomoo Shimada
Stomatal regulators are co-opted for seta development in the astomatous liverwort Marchantia polymorpha. Nature plants 9 (2) (2023)
Rui Sun, Maiko Okabe, Sho Miyazaki, Toshiaki Ishida, Kiyoshi Mashiguchi, Keisuke Inoue, Yoshihiro Yoshitake, Shohei Yamaoka, Ryuichi Nishihama, Hiroshi Kawaide, Masatoshi Nakajima, Shinjiro Yamaguchi, Takayuki Kohchi
Biosynthesis of gibberellin-related compounds modulates far-red light responses in the liverwort Marchantia polymorpha. The Plant cell (2023)
Yoko Tomizawa, Naoki Minamino, Eita Shimokawa, Shogo Kawamura, Aino Komatsu, Takuma Hiwatashi, Ryuichi Nishihama, Takashi Ueda, Takayuki Kohchi, Yohei Kondo
Harnessing Deep Learning to Analyze Cryptic Morphological Variability of Marchantia polymorpha. Plant & cell physiology (2023)
Kenta C Moriya, Makoto Shirakawa, Jeanne Loue-Manifel, Yoriko Matsuda, Yen-Ting Lu, Kentaro Tamura, Yoshito Oka, Tomonao Matsushita, Ikuko Hara-Nishimura, Gwyneth C Ingram, Ryuichi Nishihama, Justin Goodrich, Takayuki Kohchi, Tomoo Shimada
Stomatal regulators are co-opted for seta development in the astomatous liverwort Marchantia polymorpha. Nature plants (2023)
Hidemasa Suzuki, Hirotaka Kato, Megumi Iwano, Ryuichi Nishihama, Takayuki Kohchi
Auxin signaling is essential for organogenesis but not for cell survival in the liverwort Marchantia polymorpha. The Plant cell 35 (3) (2023)
Kenta C Moriya, Makoto Shirakawa, Jeanne Loue-Manifel, Yoriko Matsuda, Yen-Ting Lu, Kentaro Tamura, Yoshito Oka, Tomonao Matsushita, Ikuko Hara-Nishimura, Gwyneth C Ingram, Ryuichi Nishihama, Justin Goodrich, Takayuki Kohchi, Tomoo Shimada
Stomatal regulators are co-opted for seta development in the astomatous liverwort Marchantia polymorpha. Nature plants 9 (2) (2023)
Kenta C Moriya, Makoto Shirakawa, Jeanne Loue-Manifel, Yoriko Matsuda, Yen-Ting Lu, Kentaro Tamura, Yoshito Oka, Tomonao Matsushita, Ikuko Hara-Nishimura, Gwyneth C Ingram, Ryuichi Nishihama, Justin Goodrich, Takayuki Kohchi, Tomoo Shimada
Stomatal regulators are co-opted for seta development in the astomatous liverwort Marchantia polymorpha. Nature plants 9 (2) (2023)
Kenta C Moriya, Makoto Shirakawa, Jeanne Loue-Manifel, Yoriko Matsuda, Yen-Ting Lu, Kentaro Tamura, Yoshito Oka, Tomonao Matsushita, Ikuko Hara-Nishimura, Gwyneth C Ingram, Ryuichi Nishihama, Justin Goodrich, Takayuki Kohchi, Tomoo Shimada
Stomatal regulators are co-opted for seta development in the astomatous liverwort Marchantia polymorpha. Nature plants (2023)
Yuki Sakamoto, Anna Ishimoto, Yuuki Sakai, Moeko Sato, Ryuichi Nishihama, Konami Abe, Yoshitake Sano, Teiichi Furuichi, Hiroyuki Tsuji, Takayuki Kohchi, Sachihiro Matsunaga
Improved clearing method contributes to deep imaging of plant organs. Communications biology 5 (1) (2022)
Haruka Shinkawa, Masataka Kajikawa, Tomoyuki Furuya, Ryuichi Nishihama, Hirokazu Tsukaya, Takayuki Kohchi, Hideya Fukuzawa
Protein Kinase MpYAK1 Is Involved in Meristematic Cell Proliferation, Reproductive Phase Change and Nutrient Signaling in the Liverwort Marchantia polymorpha. Plant & cell physiology 63 (8) (2022)
Sakiko Ishida, Hidemasa Suzuki, Aya Iwaki, Shogo Kawamura, Shohei Yamaoka, Mikiko Kojima, Yumiko Takebayashi, Katsushi Yamaguchi, Shuji Shigenobu, Hitoshi Sakakibara, Takayuki Kohchi, Ryuichi Nishihama
Diminished Auxin Signaling Triggers Cellular Reprogramming by Inducing a Regeneration Factor in the Liverwort Marchantia polymorpha. Plant & cell physiology 63 (3) (2022)
Hidekazu Iwakawa, Katharina Melkonian, Titus Schlüter, Hyung-Woo Jeon, Ryuichi Nishihama, Hiroyasu Motose, Hirofumi Nakagami
Agrobacterium-Mediated Transient Transformation of Marchantia Liverworts. Plant & cell physiology 62 (11) (2022)
John L Bowman, Mario Alberto Arteaga-Vázquez, Frederic Berger, Liam N Briginshaw, Philip Carella, Adolfo Aguilar-Cruz, Kevin M Davies, Tom Dierschke, Liam Dolan, Ana Elena Dorantes-Acosta, Tom J Fisher, Eduardo Flores Sandoval, Kazutaka Futagami, Kimitsune Ishizaki, Rubina Jibran, Takehiko Kanazawa, Hirotaka Kato, Takayuki Kohchi, Jonathan Levins, Shih-Shun Lin, Hirofumi Nakagami, Ryuichi Nishihama, Facundo Romani, Sebastian Schornack, Yasuhiro Tanizawa, Masayuki Tsuzuki, Takashi Ueda, Yuichiro Watanabe, Katsuyuki T Yamato, Sabine Zachgo
The renaissance and enlightenment of Marchantia as a model system. The Plant cell 34 (10) (2022)
Hidemasa Suzuki, Hirotaka Kato, Megumi Iwano, Ryuichi Nishihama, Takayuki Kohchi
Auxin signaling is essential for organogenesis but not for cell survival in the liverwort Marchantia polymorpha. The Plant cell (2022)
Shogo Kawamura, Facundo Romani, Masaru Yagura, Takako Mochizuki, Mika Sakamoto, Shohei Yamaoka, Ryuichi Nishihama, Yasukazu Nakamura, Katsuyuki T Yamato, John L Bowman, Takayuki Kohchi, Yasuhiro Tanizawa
MarpolBase Expression: A Web-Based, Comprehensive Platform for Visualization and Analysis of Transcriptomes in the Liverwort Marchantia polymorpha. Plant & cell physiology 63 (11) (2022)
Ryosuke Takizawa, Miki Hatada, Yuta Moriwaki, Sachika Abe, Yuko Yamashita, Ryoma Arimitsu, Katsuyuki T Yamato, Ryuichi Nishihama, Takayuki Kohchi, Takao Koeduka, Feng Chen, Kenya Fujita
Fungal-Type Terpene Synthases in Marchantia polymorpha Are Involved in Sesquiterpene Biosynthesis in Oil Body Cells. Plant & cell physiology 62 (3) (2021)
Masaaki Umeda, Momoko Ikeuchi, Masaki Ishikawa, Toshiro Ito, Ryuichi Nishihama, Junko Kyozuka, Keiko U Torii, Akiko Satake, Gohta Goshima, Hitoshi Sakakibara
Plant stem cell research is uncovering the secrets of longevity and persistent growth. The Plant journal : for cell and molecular biology 106 (2) (2021)
Hirotaka Kato, Sumanth K Mutte, Hidemasa Suzuki, Isidro Crespo, Shubhajit Das, Tatyana Radoeva, Mattia Fontana, Yoshihiro Yoshitake, Emi Hainiwa, Willy van den Berg, Simon Lindhoud, Kimitsune Ishizaki, Johannes Hohlbein, Jan Willem Borst, D Roeland Boer, Ryuichi Nishihama, Takayuki Kohchi, Dolf Weijers
Design principles of a minimal auxin response system. Nature plants 6 (5) (2020)
Hidemasa Suzuki, C Jill Harrison, Masaki Shimamura, Takayuki Kohchi, Ryuichi Nishihama
Positional cues regulate dorsal organ formation in the liverwort Marchantia polymorpha. Journal of plant research 133 (3) (2020)
Tetsuya Hisanaga, Keitaro Okahashi, Shohei Yamaoka, Tomoaki Kajiwara, Ryuichi Nishihama, Masaki Shimamura, Katsuyuki T Yamato, John L Bowman, Takayuki Kohchi, Keiji Nakajima
A cis-acting bidirectional transcription switch controls sexual dimorphism in the liverwort. The EMBO journal 38 (6) (2019)
Shiori S Aki, Ryuichi Nishihama, Takayuki Kohchi, Masaaki Umeda
Cytokinin signaling coordinates development of diverse organs in Marchantia polymorpha. Plant signaling & behavior 14 (11) (2019)
Satoshi Naramoto, Victor Arnold Shivas Jones, Nicola Trozzi, Mayuko Sato, Kiminori Toyooka, Masaki Shimamura, Sakiko Ishida, Kazuhiko Nishitani, Kimitsune Ishizaki, Ryuichi Nishihama, Takayuki Kohchi, Liam Dolan, Junko Kyozuka
A conserved regulatory mechanism mediates the convergent evolution of plant shoot lateral organs. PLoS biology 17 (12) (2019)
Tomoyuki Furuya, Koro Hattori, Yoshitaka Kimori, Sakiko Ishida, Ryuichi Nishihama, Takayuki Kohchi, Hirokazu Tsukaya
ANGUSTIFOLIA contributes to the regulation of three-dimensional morphogenesis in the liverwort Marchantia polymorpha. Development (Cambridge, England) 145 (18) (2018)
Asuka Higo, Tomokazu Kawashima, Michael Borg, Mingmin Zhao, Irene López-Vidriero, Hidetoshi Sakayama, Sean A Montgomery, Hiroyuki Sekimoto, Dieter Hackenberg, Masaki Shimamura, Tomoaki Nishiyama, Keiko Sakakibara, Yuki Tomita, Taisuke Togawa, Kan Kunimoto, Akihisa Osakabe, Yutaka Suzuki, Katsuyuki T Yamato, Kimitsune Ishizaki, Ryuichi Nishihama, Takayuki Kohchi, José M Franco-Zorrilla, David Twell, Frédéric Berger, Takashi Araki
Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants. Nature communications 9 (1) (2018)
Shigeo S Sugano, Ryuichi Nishihama, Makoto Shirakawa, Junpei Takagi, Yoriko Matsuda, Sakiko Ishida, Tomoo Shimada, Ikuko Hara-Nishimura, Keishi Osakabe, Takayuki Kohchi
Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha. PloS one 13 (10) (2018)

Ryuichi Nishihama.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Ryuichi Nishihama