Sean R Eddy

ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 17

Top Venues

eLife

Bioinformatics (Oxford, England)

Nature

PLoS computational biology

Harvard University

University of Colorado Boulder (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Harvard University

United States

Professor :: Molecular & Cellular Biology, and Applied Mathematics

HHMI Janelia Research Campus

United States

Group leader

Washington University School of Medicine

United States

Alvin Goldfarb Distinguished Professor of Computational Biology :: Genetics

MRC Laboratory of Molecular Biology

United Kingdom

Postdoc

NeXagen

United States

Postdoc

Education History

University of Colorado Boulder

United States

PHD :: Molecular, Cellular, and Developmental Biology

California Institute of Technology

United States

BSC :: Biology

Publications

Sean R Eddy
Mammalian cells repress random DNA that yeast transcribes. Nature (2024)
Sean R Eddy
Mammalian cells repress random DNA that yeast transcribes. Nature 628 (8007) (2024)
Jenny Chen, Phoebe R Richardson, Christopher Kirby, Sean R Eddy, Hopi E Hoekstra
Cellular evolution of the hypothalamic preoptic area of behaviorally divergent deer mice. bioRxiv : the preprint server for biology (2024)
Sean R Eddy
Mammalian cells repress random DNA that yeast transcribes. Nature 628 (8007) (2024)
Yekaterina Shulgina, Sean R Eddy
Codetta: predicting the genetic code from nucleotide sequence. Bioinformatics (Oxford, England) 39 (1) (2023)
Yekaterina Shulgina, Sean R Eddy
Codetta: predicting the genetic code from nucleotide sequence. Bioinformatics (Oxford, England) 39 (1) (2023)
Yekaterina Shulgina, Sean R Eddy
Codetta: predicting the genetic code from nucleotide sequence. Bioinformatics (Oxford, England) 39 (1) (2023)
Yekaterina Shulgina, Sean R Eddy
Codetta: predicting the genetic code from nucleotide sequence. Bioinformatics (Oxford, England) 39 (1) (2023)
Samantha Petti, Sean R Eddy
Constructing benchmark test sets for biological sequence analysis using independent set algorithms. PLoS computational biology 18 (3) (2022)
Yekaterina Shulgina, Sean R Eddy
A computational screen for alternative genetic codes in over 250,000 genomes. eLife 10 (2021)
Caroline M Weisman, Andrew W Murray, Sean R Eddy
Many, but not all, lineage-specific genes can be explained by homology detection failure. PLoS biology 18 (11) (2020)
Fred Pejman Davis, Aljoscha Nern, Serge Picard, Michael B Reiser, Gerald M Rubin, Sean R Eddy, Gilbert Lee Henry
A genetic, genomic, and computational resource for exploring neural circuit function. eLife 9 (2020)
Grey W Wilburn, Sean R Eddy
Remote homology search with hidden Potts models. PLoS computational biology 16 (11) (2020)
Peter K Koo, Sean R Eddy
Representation learning of genomic sequence motifs with convolutional neural networks. PLoS computational biology 15 (12) (2019)
Harleen Saini, Alicia A Bicknell, Sean R Eddy, Melissa J Moore
Free circular introns with an unusual branchpoint in neuronal projections. eLife 8 (2019)
Elena Rivas, Jody Clements, Sean R Eddy
A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs. Nature methods 14 (1) (2016)
Alisa Mo, Chongyuan Luo, Fred P Davis, Eran A Mukamel, Gilbert L Henry, Joseph R Nery, Mark A Urich, Serge Picard, Ryan Lister, Sean R Eddy, Michael A Beer, Joseph R Ecker, Jeremy Nathans
Epigenomic landscapes of retinal rods and cones. eLife 5 (2016)
Robert Hubley, Robert D Finn, Jody Clements, Sean R Eddy, Thomas A Jones, Weidong Bao, Arian F A Smit, Travis J Wheeler
The Dfam database of repetitive DNA families. Nucleic acids research 44 (D1) (2015)
Robert D Finn, Penelope Coggill, Ruth Y Eberhardt, Sean R Eddy, Jaina Mistry, Alex L Mitchell, Simon C Potter, Marco Punta, Matloob Qureshi, Amaia Sangrador-Vegas, Gustavo A Salazar, John Tate, Alex Bateman
The Pfam protein families database: towards a more sustainable future. Nucleic acids research 44 (D1) (2015)

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Publication Activity (10 Years)

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Sean R Eddy