Stefano Lonardi (S Lonardi)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 18

Top Venues

NAR genomics and bioinformatics

bioRxiv : the preprint server for biology

International journal of genomics

Genome biology

University of California Riverside

Purdue University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Riverside Aug 01 2001

United States

Professor and Vice Chair :: Computer Science and Engineering

Celera Genomics

United States

Intern

University of Verona

Italy

Consultant :: Neurosurgery

Education History

Purdue University Aug 01 1996 - Aug 01 2001

United States

PHD :: Computer Science

Publications

Patrick Obia Ongom, Christian Fatokun, Abou Togola, Ana Luísa Garcia-Oliveira, Eng Hwa Ng, Andrzej Kilian, Stefano Lonardi, Timothy J Close, Ousmane Boukar
A Mid-Density Single-Nucleotide Polymorphism Panel for Molecular Applications in Cowpea ( Vigna unguiculata (L.) Walp). International journal of genomics 2024 (2024)
Tiffany Fang, Amir Mohseni, Stefano Lonardi, Choukri Ben Mamoun
Properties and predicted functions of large genes and proteins of apicomplexan parasites. NAR genomics and bioinformatics 6 (2) (2024)
Patrick Obia Ongom, Christian Fatokun, Abou Togola, Ana Luísa Garcia-Oliveira, Eng Hwa Ng, Andrzej Kilian, Stefano Lonardi, Timothy J Close, Ousmane Boukar
A Mid-Density Single-Nucleotide Polymorphism Panel for Molecular Applications in Cowpea ( Vigna unguiculata (L.) Walp). International journal of genomics 2024 (2024)
Tiffany Fang, Amir Mohseni, Stefano Lonardi, Choukri Ben Mamoun
Properties and predicted functions of large genes and proteins of apicomplexan parasites. NAR genomics and bioinformatics 6 (2) (2024)
Saleh Sereshki, Stefano Lonardi
Predicting Differentially Methylated Cytosines in TET and DNMT3 Knockout Mutants via a Large Language Model. bioRxiv : the preprint server for biology (2024)
Patrick Obia Ongom, Christian Fatokun, Abou Togola, Ana Luísa Garcia-Oliveira, Eng Hwa Ng, Andrzej Kilian, Stefano Lonardi, Timothy J Close, Ousmane Boukar
A Mid-Density Single-Nucleotide Polymorphism Panel for Molecular Applications in Cowpea ( Vigna unguiculata (L.) Walp). International journal of genomics 2024 (2024)
Steven P Maher, Malina A Bakowski, Amélie Vantaux, Erika L Flannery, C Andolina, M Gupta, Yevgeniya Antonova-Koch, M Argomaniz, M Cabrera-Mora, B Campo, A T Chao, Arnab K Chatterjee, W T Cheng, C A Cooper, K Cottier, M R Galinski, A Harupa-Chung, H Ji, S B Joseph, T Lenz, Stefano Lonardi, J Matheson, Sebastian A Mikolajczak, V Padín-Irizarry, K Pan, J Péneau, J Prudhomme, Camille Roesch, S S Sabnis, C L Saney, Jetsumon Sattabongkot, S Sereshki, S Suriyakan, T Moeller, R Ubalee, Y Wang, P Wasisakun, J Yin, Case W MacNamara, Chester J Joyner, Francois H Nosten, Benoit Witkowski, Karine Le Roch, Dennis E Kyle
A Drug Repurposing Approach Reveals Targetable Epigenetic Pathways in Plasmodium vivax Hypnozoites. bioRxiv : the preprint server for biology (2023)
Pallavi Singh, Stefano Lonardi, Qihua Liang, Pratap Vydyam, Eleonora Khabirova, Tiffany Fang, Shalev Gihaz, Jose Thekkiniath, Muhammad Munshi, Steven Abel, Loic Ciampossin, Gayani Batugedara, Mohit Gupta, Xueqing Maggie Lu, Todd Lenz, Sakshar Chakravarty, Emmanuel Cornillot, Yangyang Hu, Wenxiu Ma, Luis Miguel González, Sergio Sánchez, Karel Estrada, Alejandro Sánchez-Flores, Estrella Montero, Omar S Harb, Karine Le Roch, Choukri Ben Mamoun
Babesia duncani multi-omics identifies virulence factors and drug targets. Nature microbiology (2023)
Saleh Sereshki, Nathan Lee, Michalis Omirou, Dionysia Fasoula, Stefano Lonardi
On the prediction of non-CG DNA methylation using machine learning. NAR genomics and bioinformatics 5 (2) (2023)
Saleh Sereshki, Nathan Lee, Michalis Omirou, Dionysia Fasoula, Stefano Lonardi
On the prediction of non-CG DNA methylation using machine learning. NAR genomics and bioinformatics 5 (2) (2023)
Steven P Maher, Malina A Bakowski, Amélie Vantaux, Erika L Flannery, C Andolina, M Gupta, Yevgeniya Antonova-Koch, M Argomaniz, M Cabrera-Mora, B Campo, A T Chao, Arnab K Chatterjee, W T Cheng, C A Cooper, K Cottier, M R Galinski, A Harupa-Chung, H Ji, S B Joseph, T Lenz, Stefano Lonardi, J Matheson, Sebastian A Mikolajczak, V Padín-Irizarry, K Pan, J Péneau, J Prudhomme, Camille Roesch, S S Sabnis, C L Saney, Jetsumon Sattabongkot, S Sereshki, S Suriyakan, T Moeller, R Ubalee, Y Wang, P Wasisakun, J Yin, Case W MacNamara, Chester J Joyner, Francois H Nosten, Benoit Witkowski, Karine Le Roch, Dennis E Kyle
A Drug Repurposing Approach Reveals Targetable Epigenetic Pathways in Plasmodium vivax Hypnozoites. bioRxiv : the preprint server for biology (2023)
Adithya Ramesh, Varun Trivedi, Sangcheon Lee, Aida Tafrishi, Cory Schwartz, Amirsadra Mohseni, Mengwan Li, Stefano Lonardi, Ian Wheeldon
acCRISPR: an activity-correction method for improving the accuracy of CRISPR screens. Communications biology 6 (1) (2023)
Saleh Sereshki, Nathan Lee, Michalis Omirou, Dionysia Fasoula, Stefano Lonardi
On the prediction of non-CG DNA methylation using machine learning. NAR genomics and bioinformatics 5 (2) (2023)
Steven P Maher, Malina A Bakowski, Amélie Vantaux, Erika L Flannery, C Andolina, M Gupta, Yevgeniya Antonova-Koch, M Argomaniz, M Cabrera-Mora, B Campo, A T Chao, Arnab K Chatterjee, W T Cheng, C A Cooper, K Cottier, M R Galinski, A Harupa-Chung, H Ji, S B Joseph, T Lenz, Stefano Lonardi, J Matheson, Sebastian A Mikolajczak, V Padín-Irizarry, K Pan, J Péneau, J Prudhomme, Camille Roesch, S S Sabnis, C L Saney, Jetsumon Sattabongkot, S Sereshki, S Suriyakan, T Moeller, R Ubalee, Y Wang, P Wasisakun, J Yin, Case W MacNamara, Chester J Joyner, Francois H Nosten, Benoit Witkowski, Karine Le Roch, Dennis E Kyle
A Drug Repurposing Approach Reveals Targetable Epigenetic Pathways in Plasmodium vivax Hypnozoites. bioRxiv : the preprint server for biology (2023)
Dipankar Baisya, Adithya Ramesh, Cory Schwartz, Stefano Lonardi, Ian Wheeldon
Genome-wide functional screens enable the prediction of high activity CRISPR-Cas9 and -Cas12a guides in Yarrowia lipolytica. Nature communications 13 (1) (2022)
Stefano Lonardi, María Muñoz-Amatriaín, Qihua Liang, Shengqiang Shu, Steve I Wanamaker, Sassoum Lo, Jaakko Tanskanen, Alan H Schulman, Tingting Zhu, Ming-Cheng Luo, Hind Alhakami, Rachid Ounit, Abid Md Hasan, Jerome Verdier, Philip A Roberts, Jansen R P Santos, Arsenio Ndeve, Jaroslav Dolezel, Jan Vrána, Samuel A Hokin, Andrew D Farmer, Steven B Cannon, Timothy J Close
The genome of cowpea (Vigna unguiculata [L.] Walp.). The Plant journal : for cell and molecular biology 98 (5) (2020)
Hind Alhakami, Hamid Mirebrahim, Stefano Lonardi
A comparative evaluation of genome assembly reconciliation tools. Genome biology 18 (1) (2017)
Lars Hahn, Chris-André Leimeister, Rachid Ounit, Stefano Lonardi, Burkhard Morgenstern
rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison. PLoS computational biology 12 (10) (2016)

Stefano Lonardi.css-eqlu8i{font-size:small;padding-left:4px;} (S Lonardi)

Publication Activity (10 Years)

Top Topics

Top Venues

Stefano Lonardi (S Lonardi)