Stéphanie Manel (Stephanie Manel)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 21

Top Topics

Convolutional Neural Network

Top Venues

Molecular ecology

Molecular ecology resources

Proceedings. Biological sciences

This page only lists publications with an associated author ORCID identifier.

Publications

Maurine Vilcot, Nadia Faure, Kimberly R Andrews, Brian W Bowen, Fabien Leprieur, Stéphanie Manel
Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish. Molecular ecology (2024)
Bastien Macé, David Mouillot, Alicia Dalongeville, Morgane Bruno, Julie Deter, Alix Varenne, Anaïs Gudefin, Pierre Boissery, Stéphanie Manel
The Tree of Life eDNA metabarcoding reveals a similar taxonomic richness but dissimilar evolutionary lineages between seaports and marine reserves. Molecular ecology (2024)
Maurine Vilcot, Nadia Faure, Kimberly R Andrews, Brian W Bowen, Fabien Leprieur, Stéphanie Manel
Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish. Molecular ecology 33 (13) (2024)
Bastien Macé, David Mouillot, Alicia Dalongeville, Morgane Bruno, Julie Deter, Alix Varenne, Anaïs Gudefin, Pierre Boissery, Stéphanie Manel
The Tree of Life eDNA metabarcoding reveals a similar taxonomic richness but dissimilar evolutionary lineages between seaports and marine reserves. Molecular ecology 33 (12) (2024)
Maurine Vilcot, Nadia Faure, Kimberly R Andrews, Brian W Bowen, Fabien Leprieur, Stéphanie Manel
Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish. Molecular ecology 33 (13) (2024)
Letizia Lamperti, Théophile Sanchez, Sara Si Moussi, David Mouillot, Camille Albouy, Benjamin Flück, Morgane Bruno, Alice Valentini, Loic Pellissier, Stéphanie Manel
New deep learning-based methods for visualizing ecosystem properties using environmental DNA metabarcoding data. Molecular ecology resources (2023)
Benjamin Flück, Laetitia Mathon, Stéphanie Manel, Alice Valentini, Tony Dejean, Camille Albouy, David Mouillot, Wilfried Thuiller, Jérôme Murienne, Sébastien Brosse, Loic Pellissier
Applying convolutional neural networks to speed up environmental DNA annotation in a highly diverse ecosystem. Scientific reports 12 (1) (2022)
Laetitia Mathon, Virginie Marques, David Mouillot, Camille Albouy, Marco Andrello, Florian Baletaud, Giomar H Borrero-Pérez, Tony Dejean, Graham J Edgar, Jonathan Grondin, Pierre-Edouard Guerin, Régis Hocdé, Jean-Baptiste Juhel, null Kadarusman, Eva Maire, Gael Mariani, Matthew McLean, Andrea Polanco F, Laurent Pouyaud, Rick D Stuart-Smith, Hagi Yulia Sugeha, Alice Valentini, Laurent Vigliola, Indra B Vimono, Loic Pellissier, Stéphanie Manel
Cross-ocean patterns and processes in fish biodiversity on coral reefs through the lens of eDNA metabarcoding. Proceedings. Biological sciences 289 (1973) (2022)
Cameron A J Walsh, Paolo Momigliano, Germain Boussarie, William D Robbins, Lucas Bonnin, Cécile Fauvelot, Jeremy J Kiszka, David Mouillot, Laurent Vigliola, Stéphanie Manel
Genomic insights into the historical and contemporary demographics of the grey reef shark. Heredity 128 (4) (2022)
Sinara Oliveira de Aquino, Catherine Kiwuka, Rémi Tournebize, Clément Gain, Pierre Marraccini, Cédric Mariac, Kévin Bethune, Marie Couderc, Philippe Cubry, Alan C Andrade, Maud Lepelley, Olivier Darracq, Dominique Crouzillat, Niels Anten, Pascal Musoli, Yves Vigouroux, Alexandre de Kochko, Stéphanie Manel, Olivier François, Valerie Poncet
Adaptive potential of Coffea canephora from Uganda in response to climate change. Molecular ecology 31 (6) (2022)
Rémi Tournebize, Leyli Borner, Stéphanie Manel, Christine N Meynard, Yves Vigouroux, Dominique Crouzillat, Coralie Fournier, Mohamed Kassam, Patrick Descombes, Christine Tranchant-Dubreuil, Hugues Parrinello, Catherine Kiwuka, Ucu Sumirat, Hyacinthe Legnate, Jean-Léon Kambale, Bonaventure Sonké, Jose Cassule Mahinga, Pascal Musoli, Steven B Janssens, Piet Stoffelen, Alexandre de Kochko, Valerie Poncet
Ecological and genomic vulnerability to climate change across native populations of Robusta coffee (Coffea canephora). Global change biology 28 (13) (2022)
Deborah M Leigh, Charles B van Rees, Katie L Millette, Martin F Breed, Chloé Schmidt, Laura D Bertola, Brian K Hand, Margaret E Hunter, Evelyn L Jensen, Francine Kershaw, Libby Liggins, Gordon Luikart, Stéphanie Manel, Joachim Mergeay, Joshua Moses Miller, Gernot Segelbacher, Sean Hoban, Ivan Paz-Vinas
Opportunities and challenges of macrogenetic studies. Nature reviews. Genetics 22 (12) (2021)
Laetitia Mathon, Alice Valentini, Pierre-Edouard Guerin, Normandeau Eric, Cyril Noël, Clément Lionnet, Emilie Boulanger, Wilfried Thuiller, Louis Bernatchez, David Mouillot, Tony Dejean, Stéphanie Manel
Benchmarking bioinformatic tools for fast and accurate eDNA metabarcoding species identification. Molecular ecology resources 21 (7) (2021)
Giulia Francesca Azzurra Donati, Niklaus Zemp, Stéphanie Manel, Maude Poirier, Thomas Claverie, Franck Ferraton, Théo Gaboriau, Rodney Govinden, Oskar Hagen, Shameel Ibrahim, David Mouillot, Julien Leblond, Pagu Julius, Laure Velez, Irthisham Zareer, Adam Ziyad, Fabien Leprieur, Camille Albouy, Loic Pellissier
Species ecology explains the spatial components of genetic diversity in tropical reef fishes. Proceedings. Biological sciences 288 (1959) (2021)
Emilie Boulanger, Laura M Benestan, Pierre-Edouard Guerin, Alicia Dalongeville, David Mouillot, Stéphanie Manel
Climate differently influences the genomic patterns of two sympatric marine fish species. The Journal of animal ecology (2021)
Marco Andrello, Christelle Noirot, Florence Débarre, Stéphanie Manel
MetaPopGen 2.0: A multilocus genetic simulator to model populations of large size. Molecular ecology resources 21 (2) (2020)
José Luis Blanco-Pastor, Philippe Barre, Thomas Keep, Thomas Ledauphin, Abraham Escobar-Gutiérrez, Anna Maria Roschanski, Evelyn Willner, Klaus J Dehmer, Matthew Hegarty, Hilde Muylle, Elisabeth Veeckman, Klaas Vandepoele, Tom Ruttink, Isabel Roldán-Ruiz, Stéphanie Manel, Jean-Paul Sampoux
Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass. Molecular ecology resources 21 (3) (2020)
Stéphanie Manel
Smoothing technical and computational obstacles in gene-environment associations. Molecular ecology resources 19 (6) (2019)
Germain Boussarie, Judith Bakker, Owen S Wangensteen, Stefano Mariani, Lucas Bonnin, Jean Baptiste Juhel, Jeremy J Kiszka, Michel Kulbicki, Stéphanie Manel, William D Robbins, Laurent Vigliola, David Mouillot
Environmental DNA illuminates the dark diversity of sharks. Science advances 4 (5) (2018)
Rémi Tournebize, Valerie Poncet, Mattias Jakobsson, Yves Vigouroux, Stéphanie Manel
McSwan: A joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes. Molecular ecology resources 19 (1) (2018)
Stéphanie Manel, Marco Andrello, Karine Henry, Daphné Verdelet, Aude Darracq, Pierre-Edouard Guerin, Bruno Desprez, Pierre Devaux
Predicting genotype environmental range from genome-environment associations. Molecular ecology 27 (13) (2018)