Vijay Kumar

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 30

Top Topics

Amyotrophic Lateral Sclerosis

Network Analysis

Binding Protein

Molecular Dynamics

Top Venues

Journal of biomolecular structure & dynamics

Biotechnology & genetic engineering reviews

Journal of cellular biochemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Kartikay Prasad, Md Imtaiyaz Hassan, Saurabh Raghuvanshi, Vijay Kumar
Understanding the relationship between cerebellum and the frontal-cortex region of C9orf72-related amyotrophic lateral sclerosis: A comparative analysis of genetic features. PloS one 19 (5) (2024)
Kartikay Prasad, Md Imtaiyaz Hassan, Saurabh Raghuvanshi, Vijay Kumar
Understanding the relationship between cerebellum and the frontal-cortex region of C9orf72-related amyotrophic lateral sclerosis: A comparative analysis of genetic features. PloS one 19 (5) (2024)
Ashraf B Abdel-Naim, Pawan Kumar, Mohammed A Bazuhair, Waleed Y Rizg, Hatoon A Niyazi, Khalil Alkuwaity, Hanouf A Niyazi, Saif A Alharthy, Steve Harakeh, Shafiul Haque, Amresh Prakash, Vijay Kumar
Computational insights into dynamics and conformational stability of N-acetylmannosamine kinase mutations. Journal of biomolecular structure & dynamics (2024)
Kartikay Prasad, Md Imtaiyaz Hassan, Saurabh Raghuvanshi, Vijay Kumar
Understanding the relationship between cerebellum and the frontal-cortex region of C9orf72-related amyotrophic lateral sclerosis: A comparative analysis of genetic features. PloS one 19 (5) (2024)
Shafiul Haque, Fatima Khatoon, Sami S Ashgar, Hani Faidah, Farkad Bantun, Naif A Jalal, Fadi S I Qashqari, Vijay Kumar
Energetic and frustration analysis of SARS-CoV-2 nucleocapsid protein mutations. Biotechnology & genetic engineering reviews (2023)
Shafiul Haque, Fatima Khatoon, Sami S Ashgar, Hani Faidah, Farkad Bantun, Naif A Jalal, Fadi S I Qashqari, Vijay Kumar
Energetic and frustration analysis of SARS-CoV-2 nucleocapsid protein mutations. Biotechnology & genetic engineering reviews (2023)
Sultan H Alamri, Shafiul Haque, Badra S Alghamdi, Haythum O Tayeb, Shereen Azhari, Reem M Farsi, Abear Elmokadem, Turki A Alamri, Steve Harakeh, Amresh Prakash, Vijay Kumar
Comprehensive mapping of mutations in TDP-43 and α-Synuclein that affect stability and binding. Journal of biomolecular structure & dynamics (2023)
Shafiul Haque, Darin Mansor Mathkor, Mustfa Faisal Alkhanani, Farkad Bantun, Aiman M Momenah, Hani Faidah, Naif A Jalal, Vijay Kumar
Comprehensive deep mutational scanning reveals the pH induced stability and binding differences between SARS-CoV-2 spike RBD and human ACE2. Journal of biomolecular structure & dynamics (2023)
Sultan Alamri, Shafiul Haque, Badra S Alghamdi, Haythum O Tayeb, Shereen Azhari, Reem M Farsi, Abear Elmokadem, Turki Alamri, Steve Harakeh, Amresh Prakash, Vijay Kumar
Comprehensive mapping of mutations in TDP-43 and α-Synuclein that affect stability and binding. Journal of biomolecular structure & dynamics (2023)
Shahzaib Ahamad, Kanipakam Hema, Shahnawaz Ahmad, Vijay Kumar, Dinesh Gupta
Insights into the structure and dynamics of SARS-CoV-2 spike glycoprotein double mutant L452R-E484Q. 3 Biotech 12 (4) (2022)
Shafiul Haque, Pawan Kumar, Darin Mansor Mathkor, Farkad Bantun, Naif A Jalal, Ahmad Hasan Mufti, Amresh Prakash, Vijay Kumar
In silico evaluation of the inhibitory potential of nucleocapsid inhibitors of SARS-CoV-2: a binding and energetic perspective. Journal of biomolecular structure & dynamics (2022)
Fatima Khatoon, Sabeeha Ali, Vijay Kumar, Abdelbaset Mohamed Elasbali, Hassan H Alhassan, Salem Hussain Alharethi, Asimul Islam, M D Imtaiyaz Hassan
Pharmacological features, health benefits and clinical implications of honokiol. Journal of biomolecular structure & dynamics (2022)
Trishala Das, Harbinder Kaur, Pratibha Gour, Kartikay Prasad, Andrew M Lynn, Amresh Prakash, Vijay Kumar
Intersection of network medicine and machine learning towards investigating the key biomarkers and pathways underlying amyotrophic lateral sclerosis: a systematic review. Briefings in bioinformatics 23 (6) (2022)
Kartikay Prasad, Suliman Yousef AlOmar, Saeed Awad M Alqahtani, R K Brojen Singh, Vijay Kumar
Brain Disease Network Analysis to Elucidate the Neurological Manifestations of COVID-19. Molecular neurobiology 58 (5) (2021)
Kartikay Prasad, Suliman Yousef AlOmar, Eman Abdullah Almuqri, Hassan Ahmed Rudayni, Vijay Kumar
Genomics-guided identification of potential modulators of SARS-CoV-2 entry proteases, TMPRSS2 and Cathepsins B/L. PloS one 16 (8) (2021)
Kartikay Prasad, Abdullah F AlAsmari, Nemat Ali, Rehan Khan, Adel Alghamdi, Vijay Kumar
Insights into the SARS-CoV-2-Mediated Alteration in the Stress Granule Protein Regulatory Networks in Humans. Pathogens (Basel, Switzerland) 10 (11) (2021)
Kartikay Prasad, Shahzaib Ahamad, Hema Kanipakam, Dinesh Gupta, Vijay Kumar
Simultaneous Inhibition of SARS-CoV-2 Entry Pathways by Cyclosporine. ACS chemical neuroscience 12 (5) (2021)
Shahzaib Ahamad, Kanipakam Hema, Vijay Kumar, Dinesh Gupta
The structural, functional, and dynamic effect of Tau tubulin kinase1 upon a mutation: A neuro-degenerative hotspot. Journal of cellular biochemistry 122 (11) (2021)
Amresh Prakash, Vijay Kumar, Atanu Banerjee, Andrew M Lynn, Rajendra Prasad
Structural heterogeneity in RNA recognition motif 2 (RRM2) of TAR DNA-binding protein 43 (TDP-43): clue to amyotrophic lateral sclerosis. Journal of biomolecular structure & dynamics 39 (1) (2020)
Preeti Pandey, Kartikay Prasad, Amresh Prakash, Vijay Kumar
Insights into the biased activity of dextromethorphan and haloperidol towards SARS-CoV-2 NSP6: in silico binding mechanistic analysis. Journal of molecular medicine (Berlin, Germany) 98 (12) (2020)
Fatima Khatoon, Kartikay Prasad, Vijay Kumar
Neurological manifestations of COVID-19: available evidences and a new paradigm. Journal of neurovirology 26 (5) (2020)
Shahzaib Ahamad, Dinesh Gupta, Vijay Kumar
Targeting SARS-CoV-2 nucleocapsid oligomerization: Insights from molecular docking and molecular dynamics simulations. Journal of biomolecular structure & dynamics (2020)
Mohd Amir, Shahnawaz Ahmad, Shahzaib Ahamad, Vijay Kumar, Taj Mohammad, Ravins Dohare, Mohamed F Alajmi, Tabish Rehman, Afzal Hussain, Asimul Islam, Faizan Ahmad, M D Imtaiyaz Hassan
Impact of Gln94Glu mutation on the structure and function of protection of telomere 1, a cause of cutaneous familial melanoma. Journal of biomolecular structure & dynamics 38 (5) (2019)
Mohd Amir, Vijay Kumar, Taj Mohammad, Ravins Dohare, Md Tabish Rehman, Mohamed F Alajmi, Afzal Hussain, Faizan Ahmad, M D Imtaiyaz Hassan
Structural and functional impact of non-synonymous SNPs in the CST complex subunit TEN1: structural genomics approach. Bioscience reports 39 (5) (2019)
Vijay Kumar, Amresh Prakash, Preeti Pandey, Andrew M Lynn, Md Imtaiyaz Hassan
TFE-induced local unfolding and fibrillation of SOD1: bridging the experiment and simulation studies. The Biochemical journal 475 (10) (2018)
Amresh Prakash, Vijay Kumar, Naveen Kumar Meena, M D Imtaiyaz Hassan, Andrew M Lynn
Comparative analysis of thermal unfolding simulations of RNA recognition motifs (RRMs) of TAR DNA-binding protein 43 (TDP-43). Journal of biomolecular structure & dynamics 37 (1) (2018)
Amresh Prakash, Vijay Kumar, Naveen Kumar Meena, Andrew M Lynn
Elucidation of the structural stability and dynamics of heterogeneous intermediate ensembles in unfolding pathway of the N-terminal domain of TDP-43. RSC advances 8 (35) (2018)
Vijay Kumar, Amresh Prakash, Andrew M Lynn
Alterations in local stability and dynamics of A4V SOD1 in the presence of trifluoroethanol. Biopolymers 109 (3) (2018)
Amresh Prakash, Vijay Kumar, Andrew M Lynn, Rizwanul Haque
Insights into the DNA binding induced thermal stabilization of transcription factor FOXP3. Journal of biomolecular structure & dynamics 37 (9) (2018)
Amresh Prakash, Vijay Kumar, Preeti Pandey, Deepak R Bharti, Poonam Vishwakarma, Ruhar Singh, M D Imtaiyaz Hassan, Andrew M Lynn
Solvent sensitivity of protein aggregation in Cu, Zn superoxide dismutase: a molecular dynamics simulation study. Journal of biomolecular structure & dynamics 36 (10) (2017)