Xiangtao Li (Zhaolei Zhang)

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 36

Top Topics

Convolutional Neural Network

Transcription Factor

Top Venues

Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Communications biology

PLoS computational biology

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Nanjun Chen, Jixiang Yu, Zhe Liu, Lingkuan Meng, Xiangtao Li, Ka-Chun Wong
Discovering DNA shape motifs with multiple DNA shape features: generalization, methods, and validation. Nucleic acids research (2024)
Nanjun Chen, Jixiang Yu, Zhe Liu, Lingkuan Meng, Xiangtao Li, Ka-Chun Wong
Discovering DNA shape motifs with multiple DNA shape features: generalization, methods, and validation. Nucleic acids research 52 (8) (2024)
Nanjun Chen, Jixiang Yu, Zhe Liu, Lingkuan Meng, Xiangtao Li, Ka-Chun Wong
Discovering DNA shape motifs with multiple DNA shape features: generalization, methods, and validation. Nucleic acids research 52 (8) (2024)
Bin Zhang, Zilong Hou, Yuning Yang, Ka-Chun Wong, Haoran Zhu, Xiangtao Li
SOFB is a comprehensive ensemble deep learning approach for elucidating and characterizing protein-nucleic-acid-binding residues. Communications biology 7 (1) (2024)
Yanchi Su, Zhuohan Yu, Yuning Yang, Ka-Chun Wong, Xiangtao Li
Distribution-Agnostic Deep Learning Enables Accurate Single-Cell Data Recovery and Transcriptional Regulation Interpretation. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 11 (16) (2024)
Yuning Yang, Gen Li, Kuan Pang, Wuxinhao Cao, Xiangtao Li, Zhaolei Zhang
Deciphering 3'UTR Mediated Gene Regulation Using Interpretable Deep Representation Learning. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2024)
Yanchi Su, Zhuohan Yu, Yuning Yang, Ka-Chun Wong, Xiangtao Li
Distribution-Agnostic Deep Learning Enables Accurate Single-Cell Data Recovery and Transcriptional Regulation Interpretation. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 11 (16) (2024)
Nanjun Chen, Jixiang Yu, Zhe Liu, Lingkuan Meng, Xiangtao Li, Ka-Chun Wong
Discovering DNA shape motifs with multiple DNA shape features: generalization, methods, and validation. Nucleic acids research 52 (8) (2024)
Bin Zhang, Zilong Hou, Yuning Yang, Ka-Chun Wong, Haoran Zhu, Xiangtao Li
SOFB is a comprehensive ensemble deep learning approach for elucidating and characterizing protein-nucleic-acid-binding residues. Communications biology 7 (1) (2024)
Yanchi Su, Zhuohan Yu, Yuning Yang, Ka-Chun Wong, Xiangtao Li
Distribution-Agnostic Deep Learning Enables Accurate Single-Cell Data Recovery and Transcriptional Regulation Interpretation. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 11 (16) (2024)
Qi Qi, Yunhe Wang, Yujian Huang, Yi Fan, Xiangtao Li
PredGCN: a Pruning-enabled Gene-Cell Net for automatic cell annotation of single cell transcriptome data. Bioinformatics (Oxford, England) 40 (7) (2024)
Nanjun Chen, Jixiang Yu, Zhe Liu, Lingkuan Meng, Xiangtao Li, Ka-Chun Wong
Discovering DNA shape motifs with multiple DNA shape features: generalization, methods, and validation. Nucleic acids research 52 (8) (2024)
Yanchi Su, Zhuohan Yu, Yuning Yang, Ka-Chun Wong, Xiangtao Li
Distribution-Agnostic Deep Learning Enables Accurate Single-Cell Data Recovery and Transcriptional Regulation Interpretation. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2024)
Yuning Yang, Gen Li, Kuan Pang, Wuxinhao Cao, Xiangtao Li, Xiangtao Li
Deciphering 3'UTR Mediated Gene Regulation Using Interpretable Deep Representation Learning. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2024)
Qi Qi, Yunhe Wang, Yujian Huang, Yi Fan, Xiangtao Li
PredGCN: a Pruning-enabled Gene-Cell Net for automatic cell annotation of single cell transcriptome data. Bioinformatics (Oxford, England) 40 (7) (2024)
Bin Zhang, Zilong Hou, Yuning Yang, Ka-Chun Wong, Haoran Zhu, Xiangtao Li
SOFB is a comprehensive ensemble deep learning approach for elucidating and characterizing protein-nucleic-acid-binding residues. Communications biology 7 (1) (2024)
Yunhe Wang, Zhuohan Yu, Shaochuan Li, Chuang Bian, Yanchun Liang, Ka-Chun Wong, Xiangtao Li
scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering. Bioinformatics (Oxford, England) 39 (2) (2023)
Zilong Hou, Yuning Yang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li
Learning the protein language of proteome-wide protein-protein binding sites via explainable ensemble deep learning. Communications biology 6 (1) (2023)
Zilong Hou, Yuning Yang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li
Learning the protein language of proteome-wide protein-protein binding sites via explainable ensemble deep learning. Communications biology 6 (1) (2023)
Haoran Zhu, Yuning Yang, Yunhe Wang, Fuzhou Wang, Yujian Huang, Yi Chang, Ka-Chun Wong, Xiangtao Li
Dynamic characterization and interpretation for protein-RNA interactions across diverse cellular conditions using HDRNet. Nature communications 14 (1) (2023)
Yi Fan, Yunhe Wang, Fuzhou Wang, Lei Huang, Yuning Yang, Ka-C Wong, Xiangtao Li
Reliable Identification and Interpretation of Single-Cell Molecular Heterogeneity and Transcriptional Regulation using Dynamic Ensemble Pruning. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2023)
Zilong Hou, Yuning Yang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li
Learning the protein language of proteome-wide protein-protein binding sites via explainable ensemble deep learning. Communications biology 6 (1) (2023)
Zhuohan Yu, Yanchi Su, Yifu Lu, Yuning Yang, Fuzhou Wang, Shixiong Zhang, Yi Chang, Ka-Chun Wong, Xiangtao Li
Topological identification and interpretation for single-cell gene regulation elucidation across multiple platforms using scMGCA. Nature communications 14 (1) (2023)
Zhuohan Yu, Yanchi Su, Yifu Lu, Yuning Yang, Fuzhou Wang, Shixiong Zhang, Yi Chang, Ka-Chun Wong, Xiangtao Li
Topological identification and interpretation for single-cell gene regulation elucidation across multiple platforms using scMGCA. Nature communications 14 (1) (2023)
Zhuohan Yu, Yanchi Su, Yifu Lu, Yuning Yang, Fuzhou Wang, Shixiong Zhang, Yi Chang, Ka-Chun Wong, Xiangtao Li
Topological identification and interpretation for single-cell gene regulation elucidation across multiple platforms using scMGCA. Nature communications 14 (1) (2023)
Zilong Hou, Yuning Yang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li
Learning the protein language of proteome-wide protein-protein binding sites via explainable ensemble deep learning. Communications biology 6 (1) (2023)
Zhuohan Yu, Yanchi Su, Yifu Lu, Yuning Yang, Fuzhou Wang, Shixiong Zhang, Yi Chang, Ka-Chun Wong, Xiangtao Li
Topological identification and interpretation for single-cell gene regulation elucidation across multiple platforms using scMGCA. Nature communications 14 (1) (2023)
Yunhe Wang, Zhuohan Yu, Shaochuan Li, Chuang Bian, Yanchun Liang, Ka-Chun Wong, Xiangtao Li
scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering. Bioinformatics (Oxford, England) 39 (2) (2023)
Yansong Wang, Zilong Hou, Yuning Yang, Ka-Chun Wong, Xiangtao Li
Genome-wide identification and characterization of DNA enhancers with a stacked multivariate fusion framework. PLoS computational biology 18 (12) (2022)
Yifu Lu, Zhuohan Yu, Yunhe Wang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li
GMHCC: high-throughput analysis of biomolecular data using graph-based multiple hierarchical consensus clustering. Bioinformatics (Oxford, England) 38 (11) (2022)
Yansong Wang, Zilong Hou, Yuning Yang, Ka-Chun Wong, Xiangtao Li
Genome-wide identification and characterization of DNA enhancers with a stacked multivariate fusion framework. PLoS computational biology 18 (12) (2022)
Yanchi Su, Fuzhou Wang, Shixiong Zhang, Yanchun Liang, Ka-Chun Wong, Xiangtao Li
scWMC: weighted matrix completion-based imputation of scRNA-seq data via prior subspace information. Bioinformatics (Oxford, England) 38 (19) (2022)
Yansong Wang, Zilong Hou, Yuning Yang, Ka-Chun Wong, Xiangtao Li
Genome-wide identification and characterization of DNA enhancers with a stacked multivariate fusion framework. PLoS computational biology 18 (12) (2022)
Yansong Wang, Zilong Hou, Yuning Yang, Ka-Chun Wong, Xiangtao Li
Genome-wide identification and characterization of DNA enhancers with a stacked multivariate fusion framework. PLoS computational biology 18 (12) (2022)
Yansong Wang, Zilong Hou, Yuning Yang, Ka-Chun Wong, Xiangtao Li
Genome-wide identification and characterization of DNA enhancers with a stacked multivariate fusion framework. PLoS computational biology 18 (12) (2022)
Yansong Wang, Zilong Hou, Yuning Yang, Ka-Chun Wong, Xiangtao Li
Genome-wide identification and characterization of DNA enhancers with a stacked multivariate fusion framework. PLoS computational biology 18 (12) (2022)