Yi Xiong

ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 19

Top Venues

Briefings in bioinformatics

Nature communications

Journal of chemical information and modeling

International journal of molecular sciences

Shanghai Jiao Tong University

Wuhan University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Shanghai Jiao Tong University Dec 31 2018

China

Associate Professor (Research) :: State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology

Shanghai Jiao Tong University Jan 13 2014 - Dec 30 2018

China

Assistant Professor (Research) :: State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology

Education History

Wuhan University Sep 01 2006 - Dec 31 2011

China

PHD :: Computer Science

Wuhan University Sep 01 2002 - Jun 30 2006

China

BSC :: Software Engineering

Publications

Wei Liu, Ziye Wang, Ronghui You, Chenghan Xie, Hong Wei, Yi Xiong, Jianyi Yang, Shanfeng Zhu
Author Correction: PLMSearch: Protein language model powers accurate and fast sequence search for remote homology. Nature communications 15 (1) (2024)
Yufang Zhang, Yanyi Chu, Shenggeng Lin, Yi Xiong, Dong-Qing Wei
ReHoGCNES-MDA: prediction of miRNA-disease associations using homogenous graph convolutional networks based on regular graph with random edge sampler. Briefings in bioinformatics 25 (2) (2024)
Wei Liu, Ziye Wang, Ronghui You, Chenghan Xie, Hong Wei, Yi Xiong, Jianyi Yang, Shanfeng Zhu
PLMSearch: Protein language model powers accurate and fast sequence search for remote homology. Nature communications 15 (1) (2024)
Yufang Zhang, Yanyi Chu, Shenggeng Lin, Yi Xiong, Dong-Qing Wei
ReHoGCNES-MDA: prediction of miRNA-disease associations using homogenous graph convolutional networks based on regular graph with random edge sampler. Briefings in bioinformatics 25 (2) (2024)
Wei Liu, Ziye Wang, Ronghui You, Chenghan Xie, Hong Wei, Yi Xiong, Jianyi Yang, Shanfeng Zhu
PLMSearch: Protein language model powers accurate and fast sequence search for remote homology. Nature communications 15 (1) (2024)
Wei Liu, Ziye Wang, Ronghui You, Chenghan Xie, Hong Wei, Yi Xiong, Jianyi Yang, Shanfeng Zhu
PLMSearch: Protein language model powers accurate and fast sequence search for remote homology. Nature communications 15 (1) (2024)
Heqi Sun, Jianmin Wang, Hongyan Wu, Shenggeng Lin, Junwei Chen, Jinghua Wei, Shuai Lv, Yi Xiong, Dong-Qing Wei
A Multimodal Deep Learning Framework for Predicting PPI-Modulator Interactions. Journal of chemical information and modeling (2023)
Jing Zhao, Bowen Zhao, Xiaotong Song, Chujun Lyu, Weizhi Chen, Yi Xiong, Dong-Qing Wei
Subtype-DCC: decoupled contrastive clustering method for cancer subtype identification based on multi-omics data. Briefings in bioinformatics 24 (2) (2023)
Song Li, Chao Hu, Song Ke, Chenxing Yang, Jun Chen, Yi Xiong, Hao Liu, Liang Hong
LS-MolGen: Ligand-and-Structure Dual-Driven Deep Reinforcement Learning for Target-Specific Molecular Generation Improves Binding Affinity and Novelty. Journal of chemical information and modeling (2023)
Jing Zhao, Bowen Zhao, Xiaotong Song, Chujun Lyu, Weizhi Chen, Yi Xiong, Dong-Qing Wei
Subtype-DCC: decoupled contrastive clustering method for cancer subtype identification based on multi-omics data. Briefings in bioinformatics (2023)
Mingming Jiang, Bowen Zhao, Shenggan Luo, Qiankun Wang, Yanyi Chu, Tianhang Chen, Xueying Mao, Yatong Liu, Yanjing Wang, Xue Jiang, Dong-Qing Wei, Yi Xiong
NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods. Briefings in bioinformatics 22 (6) (2022)
Wei Wang, QiuYing Dai, Fang Li, Yi Xiong, Dong-Qing Wei
MLCDForest: multi-label classification with deep forest in disease prediction for long non-coding RNAs. Briefings in bioinformatics 22 (3) (2021)
Shenggeng Lin, Yanjing Wang, Lingfeng Zhang, Yanyi Chu, Yatong Liu, Yitian Fang, Mingming Jiang, Qiankun Wang, Bowen Zhao, Yi Xiong, Dong-Qing Wei
MDF-SA-DDI: predicting drug-drug interaction events based on multi-source drug fusion, multi-source feature fusion and transformer self-attention mechanism. Briefings in bioinformatics (2021)
Yumeng Zhang, Yangming Zhang, Yi Xiong, Hui Wang, Zixin Deng, Jiangning Song, Hongping Qu
T4SEfinder: a bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model. Briefings in bioinformatics (2021)
Yanyi Chu, Xiaoqi Shan, Tianhang Chen, Mingming Jiang, Yanjing Wang, Qiankun Wang, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei
DTI-MLCD: predicting drug-target interactions using multi-label learning with community detection method. Briefings in bioinformatics 22 (3) (2021)
Xiaoqi Shan, Xiangeng Wang, Cheng-Dong Li, Yanyi Chu, Yufang Zhang, Yi Xiong, Dong-Qing Wei
Prediction of CYP450 Enzyme-Substrate Selectivity Based on the Network-Based Label Space Division Method. Journal of chemical information and modeling 59 (11) (2019)
Yanjing Wang, Xiangeng Wang, Yi Xiong, Cheng-Dong Li, Qin Xu, Lu Shen, Aman Chandra Kaushik, Dong-Qing Wei
An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15. International journal of molecular sciences 20 (24) (2019)
Qiankun Wang, Aamir Mehmood, Heng Wang, Qin Xu, Yi Xiong, Dong-Qing Wei
Computational Screening and Analysis of Lung Cancer Related Non-Synonymous Single Nucleotide Polymorphisms on the Human Kirsten Rat Sarcoma Gene. Molecules (Basel, Switzerland) 24 (10) (2019)
Li-Yue Bai, Hao Dai, Qin Xu, Muhammad Junaid, Shao-Liang Peng, Xiaolei Zhu, Yi Xiong, Dong-Qing Wei
Prediction of Effective Drug Combinations by an Improved Naïve Bayesian Algorithm. International journal of molecular sciences 19 (2) (2018)

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Publication Activity (10 Years)

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Yi Xiong