Epidemiological Significance of SARS-CoV-2 RNA Dynamic in Naso-Pharyngeal Swabs.
Paolo CalistriMaria Luisa DanzettaLaura AmatoFrancesca CitoAlessandra Di GiuseppeValentina ZenobioDaniela MorelliIlaria PugliaMarialuigia CaporaleSilvia ScialabbaGiovanni SaviniGiacomo MiglioratiNicola D'AlterioAlessio LorussoPublished in: Microorganisms (2021)
From 16 March to 15 December 2020, 132,357 naso-pharyngeal/oropharyngeal swabs were collected in the province of Teramo, Abruzzo Region, Italy, and tested for the presence of SARS-CoV-2 genomic RNA by a commercially available molecular assay. A total of 12,880 swabs resulted positive. For 8212 positive patients (4.150 women and 4.062 men) the median age was statistically different between women (median: 49.55 ± 23.9 of SD) and men (median: 48.35 ± 23.5 of SD) while no differences were found in the comparison between the cycle threshold for the N protein-encoding gene (CT N) median values and gender. Differences were observed in the CT N gene median values of swabs collected from March to September as well as in the pairwise comparison between September and October and between November and December. The CT N gene median values observed in specific periods characterizing the SARS-CoV-2 epidemic in 2020 were also compared with the incidence of COVID-19 cases; a strong inverse correlation was highlighted (Pearson correlation coefficient = -0.978). Our findings confirm the usefulness of the CT N values as an indirect detection parameter to monitor viral loads in the population.
Keyphrases
- sars cov
- image quality
- dual energy
- computed tomography
- contrast enhanced
- respiratory syndrome coronavirus
- copy number
- genome wide
- end stage renal disease
- polycystic ovary syndrome
- positron emission tomography
- magnetic resonance imaging
- chronic kidney disease
- ejection fraction
- newly diagnosed
- genome wide identification
- risk factors
- coronavirus disease
- type diabetes
- pregnancy outcomes
- prognostic factors
- loop mediated isothermal amplification
- high throughput
- dna methylation
- transcription factor
- binding protein
- diffusion weighted imaging
- pregnant women
- single cell
- nucleic acid
- patient reported
- protein protein
- single molecule