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Bursting noise in gene expression dynamics: linking microscopic and mesoscopic models.

Yen Ting LinTobias Galla
Published in: Journal of the Royal Society, Interface (2016)
The dynamics of short-lived mRNA results in bursts of protein production in gene regulatory networks. We investigate the propagation of bursting noise between different levels of mathematical modelling and demonstrate that conventional approaches based on diffusion approximations can fail to capture bursting noise. An alternative coarse-grained model, the so-called piecewise deterministic Markov process (PDMP), is seen to outperform the diffusion approximation in biologically relevant parameter regimes. We provide a systematic embedding of the PDMP model into the landscape of existing approaches, and we present analytical methods to calculate its stationary distribution and switching frequencies.
Keyphrases
  • gene expression
  • air pollution
  • molecular dynamics
  • dna methylation
  • binding protein
  • molecular dynamics simulations
  • single cell
  • protein protein
  • network analysis