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resevol: An R package for spatially explicit models of pesticide resistance given evolving pest genomes.

Alexander Bradley DuthieRosie ManganC Rose McKeonMatthew C TinsleyLuc F Bussière
Published in: PLoS computational biology (2023)
The evolution of pesticide resistance is a widespread problem with potentially severe consequences for global food security. We introduce the resevol R package, which simulates individual-based models of pests with evolving genomes that produce complex, polygenic, and covarying traits affecting pest life history and pesticide resistance. Simulations are modelled on a spatially-explicit and highly customisable landscape in which crop and pesticide application and rotation can vary, making the package a highly flexible tool for both general and tactical models of pest management and resistance evolution. We present the key features of the resevol package and demonstrate its use for a simple example simulating pests with two covarying traits. The resevol R package is open source under GNU Public License. All source code and documentation are available on GitHub.
Keyphrases
  • risk assessment
  • healthcare
  • genome wide
  • emergency department
  • mental health
  • human health
  • early onset
  • public health
  • molecular dynamics
  • single cell
  • electronic health record