Analysis of Bladder Cancer Staging Prediction Using Deep Residual Neural Network, Radiomics, and RNA-Seq from High-Definition CT Images.
Yao ZhouXingju ZhengZhucheng SunBo WangPublished in: Genetics research (2024)
Bladder cancer has recently seen an alarming increase in global diagnoses, ascending as a predominant cause of cancer-related mortalities. Given this pressing scenario, there is a burgeoning need to identify effective biomarkers for both the diagnosis and therapeutic guidance of bladder cancer. This study focuses on evaluating the potential of high-definition computed tomography (CT) imagery coupled with RNA-sequencing analysis to accurately predict bladder tumor stages, utilizing deep residual networks. Data for this study, including CT images and RNA-Seq datasets for 82 high-grade bladder cancer patients, were sourced from the TCIA and TCGA databases. We employed Cox and lasso regression analyses to determine radiomics and gene signatures, leading to the identification of a three-factor radiomics signature and a four-gene signature in our bladder cancer cohort. ROC curve analyses underscored the strong predictive capacities of both these signatures. Furthermore, we formulated a nomogram integrating clinical features, radiomics, and gene signatures. This nomogram's AUC scores stood at 0.870, 0.873, and 0.971 for 1-year, 3-year, and 5-year predictions, respectively. Our model, leveraging radiomics and gene signatures, presents significant promise for enhancing diagnostic precision in bladder cancer prognosis, advocating for its clinical adoption.
Keyphrases
- dna methylation
- genome wide
- rna seq
- contrast enhanced
- single cell
- lymph node metastasis
- computed tomography
- copy number
- magnetic resonance imaging
- dual energy
- image quality
- high grade
- positron emission tomography
- neural network
- squamous cell carcinoma
- magnetic resonance
- deep learning
- spinal cord injury
- electronic health record
- convolutional neural network
- big data
- genome wide identification
- machine learning
- pulmonary hypertension
- data analysis
- human health