ENTRAIN: integrating trajectory inference and gene regulatory networks with spatial data to co-localize the receptor-ligand interactions that specify cell fate.

Wunna KyawRyan C ChaiWeng Hua KhooLeonard D GoldsteinPeter I CroucherJohn M MurrayTri Giang Phan

Published in: Bioinformatics (Oxford, England) (2023)

ENTRAIN is available as a public package at https://github.com/theimagelab/entrain and can be used on both single-cell and spatially resolved datasets.

Keyphrases

single cell
cell fate
rna seq
healthcare
high throughput
electronic health record
mental health
big data
binding protein
machine learning
adverse drug
network analysis