Mixed-solvent molecular dynamics simulation-based discovery of a putative allosteric site on regulator of G protein signaling 4.
Wallace K B ChanDebarati Das GuptaHeather A CarlsonJohn R TraynorPublished in: Journal of computational chemistry (2021)
Regulator of G protein signaling 4 (RGS4) is an intracellular protein that binds to the Gα subunit ofheterotrimeric G proteins and aids in terminating G protein coupled receptor signaling. RGS4 has been implicated in pain, schizophrenia, and the control of cardiac contractility. Inhibitors of RGS4 have been developed but bind covalently to cysteine residues on the protein. Therefore, we sought to identify alternative druggable sites on RGS4 using mixed-solvent molecular dynamics simulations, which employ low concentrations of organic probes to identify druggable hotspots on the protein. Pseudo-ligands were placed in consensus hotspots, and perturbation with normal mode analysis led to the identification and characterization of a putative allosteric site, which would be invaluable for structure-based drug design of non-covalent, small molecule inhibitors. Future studies on the mechanism of this allostery will aid in the development of novel therapeutics targeting RGS4.
Keyphrases
- small molecule
- molecular dynamics simulations
- protein protein
- molecular docking
- chronic pain
- transcription factor
- binding protein
- amino acid
- emergency department
- left ventricular
- heart failure
- high throughput
- pain management
- cancer therapy
- drug delivery
- antiretroviral therapy
- solar cells
- spinal cord
- fluorescence imaging