ARGprofiler-a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets.

Hannah-Marie MartinyNikiforos PyrounakisThomas N PetersenOksana LukjančenkoFrank M AarestrupPhilip T L C ClausenPatrick Munk

Published in: Bioinformatics (Oxford, England) (2024)

The ARGprofiler pipeline is a Snakemake workflow that supports the reuse of metagenomic sequencing data and is easily installable and maintained at https://github.com/genomicepidemiology/ARGprofiler.

Keyphrases

antimicrobial resistance
antibiotic resistance genes
electronic health record
wastewater treatment
single cell
genome wide
rna seq
big data
microbial community
bioinformatics analysis
dna methylation
machine learning
artificial intelligence