Login / Signup

Draft genome sequence of the oomycete Pythium destruens strain ATCC 64221 from a horse with pythiosis in Australia.

Theerapong KrajaejunWeerayuth KittichotiratPreecha PatumcharoenpolThidarat RujirawatTassanee LohnooWanta Yingyong
Published in: BMC research notes (2020)
Genomic DNA of the P. destruens strain ATCC 64221, isolated from a horse with pythiosis in Australia, was used to prepare one paired-end library (with 180-bp insert) for next-generation sequencing, using the Illumina HiSeq 2500 short-read platform. Raw reads were cleaned and assembled by several bioinformatics tools. A total of 20,860,454 processed reads, accounted for 2,614,890,553 total bases, can be assembled into a 37.8-Mb genome, consisting 13,060 contigs (average length: 2896 bases; range: 300-142,967), N50 of 11,370 bases, and 2.9% 'N' composition. The genome was determined 85.9% completeness, contained 14,424 predicted genes, and can be retrieved online at the NCBI/DDBJ databases under the accession number BCFQ01000000.1.
Keyphrases
  • genome wide
  • circulating tumor
  • copy number
  • single molecule
  • social media
  • cell free
  • dna methylation
  • health information
  • high throughput
  • big data
  • healthcare
  • machine learning
  • genome wide identification