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Transcriptome-wide profiling of N 6 -methyladenosine via a selective chemical labeling method.

Yalun XieShaoqing HanQiming LiZhentian FangWei YangQi WeiYafen WangYu ZhouXiaocheng WengXiang Zhou
Published in: Chemical science (2022)
Studies of chemical modifications on RNA have ushered in the field of epitranscriptomics. N 6 -Methyladenosine (m 6 A) is the most typical RNA modification and is indispensable for basic biological processes. This study presents a chemical pulldown method (m 6 A-ORL-Seq) for transcriptome-wide profiling of m 6 A. Moreover, chemical labeling results in a specific reverse transcription (RT) truncation signature. This study has identified four thousand high-confidence m 6 A sites at single-base resolution in the human transcriptome. Unlike previously reported methods based on m 6 A-antibody or m 6 A-sensitive enzymes, the antibody/enzyme-free chemical method provides a new perspective for single-base m 6 A detection at the transcriptome level.
Keyphrases
  • single cell
  • rna seq
  • genome wide
  • gene expression
  • endothelial cells
  • dna methylation
  • transcription factor
  • label free