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Detection of Circulating Tumor DNA with a Single-Molecule Sequencing Analysis Validated for Targeted and Immunotherapy Selection.

Alexander AtkinsPratyush GuptaBing Melody ZhangWen-Sy TsaiJulian LucasManana JaveyAnagh VoraRui Mei
Published in: Molecular diagnosis & therapy (2020)
We have demonstrated that OncoLBx detects VAFs of ≥ 0.1% for SNVs and indels, ≥ 0.5% for fusions, ≥ 4.5 copies for CNVs and ≥ 2% for MSI, with all variant types having specificity ≥ 99.999%. Diagnostic performance of paired samples displays 80% sensitivity and > 99.999% clinical specificity. Clinical utility and performance were assessed in 416 solid tumor samples. Variants were detected in 79% of samples, for which 87.34% of positive samples had available targeted therapy.
Keyphrases
  • single molecule
  • circulating tumor
  • cell free
  • circulating tumor cells
  • living cells
  • atomic force microscopy
  • copy number
  • drug delivery
  • single cell
  • cancer therapy
  • loop mediated isothermal amplification
  • real time pcr