Pan-cancer detection of driver genes at the single-patient resolution.
Joel NulsenHrvoje MiseticChristopher YauFrancesca D CiccarelliPublished in: Genome medicine (2021)
sysSVM2 can be used to identify driver alterations in patients lacking sufficient canonical drivers or belonging to rare cancer types for which assembling a large enough cohort is challenging, furthering the goals of precision oncology. As resources for the community, we provide the code to implement sysSVM2 and the pre-trained models in all TCGA cancer types ( https://github.com/ciccalab/sysSVM2 ).