Advances in machine-learning approaches to RNA-targeted drug design.
Yuanzhe ZhouShi-Jie ChenPublished in: Artificial intelligence chemistry (2024)
RNA molecules play multifaceted functional and regulatory roles within cells and have garnered significant attention in recent years as promising therapeutic targets. With remarkable successes achieved by artificial intelligence (AI) in different fields such as computer vision and natural language processing, there is a growing imperative to harness AI's potential in computer-aided drug design (CADD) to discover novel drug compounds that target RNA. Although machine-learning (ML) approaches have been widely adopted in the discovery of small molecules targeting proteins, the application of ML approaches to model interactions between RNA and small molecule is still in its infancy. Compared to protein-targeted drug discovery, the major challenges in ML-based RNA-targeted drug discovery stem from the scarcity of available data resources. With the growing interest and the development of curated databases focusing on interactions between RNA and small molecule, the field anticipates a rapid growth and the opening of a new avenue for disease treatment. In this review, we aim to provide an overview of recent advancements in computationally modeling RNA-small molecule interactions within the context of RNA-targeted drug discovery, with a particular emphasis on methodologies employing ML techniques.
Keyphrases
- small molecule
- drug discovery
- artificial intelligence
- machine learning
- big data
- protein protein
- nucleic acid
- deep learning
- induced apoptosis
- autism spectrum disorder
- risk assessment
- signaling pathway
- cell death
- transcription factor
- body mass index
- working memory
- combination therapy
- cell proliferation
- physical activity
- weight gain
- endoplasmic reticulum stress
- weight loss
- smoking cessation