Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings.
Remzi CelebiHuseyin UyarErkan YasarOzgur GumusOguz DikenelliMichel DumontierPublished in: BMC bioinformatics (2019)
We showed that the knowledge embeddings are powerful predictors and comparable to current state-of-the-art methods for inferring new DDIs. We addressed the evaluation biases by introducing drug-wise and pairwise disjoint test classes. Although the performance scores for drug-wise and pairwise disjoint seem to be low, the results can be considered to be realistic in predicting the interactions for drugs with limited interaction information.