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Isolation of Paraphaeoketones: A Plausible Biosynthetic Explanation for Paraphaeolactones via a Benzilic Acid Rearrangement Rather than a Favorskii Rearrangement.

Yuki OinumaRyuhi KaneharaHayato MaedaToshio NishikawaKatsuhiro KonnoKazuaki TanakaMasaru Hashimoto
Published in: Journal of natural products (2024)
Paraphaeoketones A-C ( 1 - 3 ) were isolated from the culture broth of Paraphaeosphaeria sp. KT4192. Their structures and relative configurations were determined using spectroscopic analysis and verified through density functional theory (DFT)-based chemical shift calculations. The absolute configurations of these compounds were determined by comparing the experimental electronic circular dichroism (ECD) spectra with those based on DFT calculations. We also propose a plausible biosynthetic route to 1 - 3 . While our prior studies on the isolation and structural elucidation of paraphaeolactones (e.g., 4 ) led us to suggest a Favorskii rearrangement for their biosynthesis, the isolation of 2 prompted the proposal of an alternative biosynthesis for 4 , featuring a benzilic acid rearrangement of 2 . Moreover, an in vitro conversion of 2 into 4 was achieved successfully, suggesting that a biosynthetic pathway for paraphaeolactones involving a benzilic acid rearrangement is more plausible than the previously presumed Favorskii rearrangement pathway. Arguments based on DFT calculations for these pathways are also described.
Keyphrases
  • density functional theory
  • molecular dynamics
  • molecular docking
  • mass spectrometry
  • cell wall