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Analysis of molecular and (di)atomic dual-descriptor functions and matrices.

Diego R AlcobaOfelia B OñaAlicia TorreLuis LainPatrick Bultinck
Published in: Journal of molecular modeling (2017)
In this work, the dual-descriptor is studied in matrix form [Formula: see text] and both coordinates condensed to atoms, resulting in atomic and diatomic (or where applicable, bond) condensed single values. This double partitioning method of the dual-descriptor matrix is proposed within the Hirshfeld-I atoms-in-molecule framework although it is easily extended to other atoms-in-molecules methods. Diagonalizing the resulting atomic and bond dual-descriptor matrices gives eigenvalues and eigenvectors describing the reactivity of atoms and bonds. The dual-descriptor function is the diagonal element of the underlying matrix. The extra information contained in the atom and bond resolution is highlighted and the effect of choosing either the fragment of molecular response or response of molecular fragment approach is quantified. Graphical Abstract Atom and bond condensed dual descriptor matrices and functions are derived from molecular ones using Hirshfeld-I atoms in molecules weight functions.
Keyphrases
  • single molecule
  • molecular dynamics
  • body mass index
  • physical activity
  • escherichia coli
  • smoking cessation
  • health information
  • transition metal
  • electron microscopy
  • low birth weight