Deep learning-based predictive identification of neural stem cell differentiation.
Yanjing ZhuRuiqi HuangZhourui WuSimin SongLiming ChengRongrong ZhuPublished in: Nature communications (2021)
The differentiation of neural stem cells (NSCs) into neurons is proposed to be critical in devising potential cell-based therapeutic strategies for central nervous system (CNS) diseases, however, the determination and prediction of differentiation is complex and not yet clearly established, especially at the early stage. We hypothesize that deep learning could extract minutiae from large-scale datasets, and present a deep neural network model for predictable reliable identification of NSCs fate. Remarkably, using only bright field images without artificial labelling, our model is surprisingly effective at identifying the differentiated cell types, even as early as 1 day of culture. Moreover, our approach showcases superior precision and robustness in designed independent test scenarios involving various inducers, including neurotrophins, hormones, small molecule compounds and even nanoparticles, suggesting excellent generalizability and applicability. We anticipate that our accurate and robust deep learning-based platform for NSCs differentiation identification will accelerate the progress of NSCs applications.
Keyphrases
- deep learning
- small molecule
- early stage
- stem cells
- convolutional neural network
- artificial intelligence
- neural network
- neural stem cells
- cell therapy
- single cell
- machine learning
- climate change
- bioinformatics analysis
- rna seq
- high throughput
- blood brain barrier
- high resolution
- spinal cord
- risk assessment
- mass spectrometry
- squamous cell carcinoma
- cerebrospinal fluid
- molecularly imprinted