Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme.
Michael C ThompsonBenjamin A BaradAlexander M WolffHyun Sun ChoFriedrich SchotteDaniel M C SchwarzPhilip AnfinrudBrian K ShoichetPublished in: Nature chemistry (2019)
Correlated motions of proteins are critical to function, but these features are difficult to resolve using traditional structure determination techniques. Time-resolved X-ray methods hold promise for addressing this challenge, but have relied on the exploitation of exotic protein photoactivity, and are therefore not generalizable. Temperature jumps, through thermal excitation of the solvent, have been utilized to study protein dynamics using spectroscopic techniques, but their implementation in X-ray scattering experiments has been limited. Here, we perform temperature-jump small- and wide-angle X-ray scattering measurements on a dynamic enzyme, cyclophilin A, demonstrating that these experiments are able to capture functional intramolecular protein dynamics on the microsecond timescale. We show that cyclophilin A displays rich dynamics following a temperature jump, and use the resulting time-resolved signal to assess the kinetics of conformational changes. Two relaxation processes are resolved: a fast process is related to surface loop motions, and a slower process is related to motions in the core of the protein that are critical for catalytic turnover.
Keyphrases
- solid phase extraction
- molecularly imprinted
- high resolution
- protein protein
- dual energy
- healthcare
- binding protein
- primary care
- molecular dynamics simulations
- molecular dynamics
- small molecule
- transcription factor
- electron microscopy
- magnetic resonance
- machine learning
- deep learning
- energy transfer
- postmenopausal women