Long-read genotyping with SLANG (Simple Long-read loci Assembly of Nanopore data for Genotyping).

Marco Dorfner Tankred OttPhilipp OttChristoph Oberprieler

Published in: Applications in plant sciences (2022)

SLANG identifies orthologous loci and extracts SNPs from long-read multi-locus Nanopore data for phylogenetic inference, population genetics, or phylogeographical studies. Combined with an AFLP-based library preparation, SLANG provides an easily scalable, cost-effective, and affordable alternative to Illumina-based RADseq/GBS procedures.

Keyphrases

genome wide
single molecule
dna methylation
genome wide association study
electronic health record
big data
genome wide association
high throughput
single cell
gene expression
case control
tandem mass spectrometry
liquid chromatography