MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction.
Valentine MurigneuxLeah W RobertsBrian M FordeMinh Duy PhanNguyen Thi Khanh NhuAdam David IrwinPatrick N A HarrisDavid L PatersonMark A SchembriDavid M WhileyScott A BeatsonPublished in: BMC genomics (2021)
MicroPIPE is built in modules using Singularity container images and the bioinformatics workflow manager Nextflow, allowing changes and adjustments to be made in response to future tool development. Overall, MicroPIPE provides an easy-access, end-to-end solution for attaining high-quality bacterial genomes. MicroPIPE is available at https://github.com/BeatsonLab-MicrobialGenomics/micropipe .