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An integrated method for targeted Oxford Nanopore sequencing and automated bioinformatics for the simultaneous detection of bacteria, fungi, and ARG.

Sanjana KuruwaAmrutraj ZadeSanchi ShahRameez MoiduShailesh LadChhaya ChandeAmeeta JoshiNilma HiraniChaitali NikamSanjay BhattacharyaAruna PoojaryMahua KapoorKiran KondabagilAnirvan Chatterjee
Published in: Journal of applied microbiology (2024)
NGS-based technologies overcome several limitations of current day diagnostics. Highly sensitive and comprehensive methods of pathogen screening are the need of the hour. We developed a framework for reliable, on-site, screening of pathogens.
Keyphrases
  • machine learning
  • label free
  • single cell
  • high throughput
  • gram negative
  • candida albicans
  • loop mediated isothermal amplification
  • multidrug resistant
  • molecularly imprinted
  • simultaneous determination