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XCAVATOR: accurate detection and genotyping of copy number variants from second and third generation whole-genome sequencing experiments.

Alberto MagiTommaso PippucciCarlo Sidore
Published in: BMC genomics (2017)
All the analyses we performed demonstrate that XCAVATOR is capable to detect germline and somatic CNVs/CNAs outperforming all the other tools we compared. XCAVATOR is freely available at http://sourceforge.net/projects/xcavator/ .
Keyphrases
  • copy number
  • mitochondrial dna
  • genome wide
  • dna methylation
  • high resolution
  • high throughput
  • dna repair
  • oxidative stress
  • mass spectrometry
  • label free
  • quantum dots
  • single cell