Login / Signup

PubChem 2023 update.

Sunghwan KimJie ChenTiejun ChengAsta GindulyteJia HeSiqian HeQingliang LiBenjamin A ShoemakerPaul A ThiessenBo YuLeonid ZaslavskyJian ZhangEvan E Bolton
Published in: Nucleic acids research (2022)
PubChem (https://pubchem.ncbi.nlm.nih.gov) is a popular chemical information resource that serves a wide range of use cases. In the past two years, a number of changes were made to PubChem. Data from more than 120 data sources was added to PubChem. Some major highlights include: the integration of Google Patents data into PubChem, which greatly expanded the coverage of the PubChem Patent data collection; the creation of the Cell Line and Taxonomy data collections, which provide quick and easy access to chemical information for a given cell line and taxon, respectively; and the update of the bioassay data model. In addition, new functionalities were added to the PubChem programmatic access protocols, PUG-REST and PUG-View, including support for target-centric data download for a given protein, gene, pathway, cell line, and taxon and the addition of the 'standardize' option to PUG-REST, which returns the standardized form of an input chemical structure. A significant update was also made to PubChemRDF. The present paper provides an overview of these changes.
Keyphrases
  • electronic health record
  • big data
  • gene expression
  • transcription factor
  • drinking water
  • artificial intelligence
  • copy number
  • health insurance