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Early identification of a ward-based outbreak of Clostridioides difficile using prospective multilocus sequence type-based Oxford Nanopore genomic surveillance.

Max G BloomfieldSamantha HuttonMegan BurtonClaire TarringCharles VelascoCarolyn ClissoldMichelle BalmMatthew KellyDonia P Macartney-CoxsonRhys T White
Published in: Infection control and hospital epidemiology (2024)
using ONT sequencing permitted the identification of an outbreak of ST2 CDI that would have otherwise gone undetected.
Keyphrases
  • clostridium difficile
  • bioinformatics analysis
  • public health
  • single molecule
  • gene expression