Login / Signup

Far-Ultraviolet Spectroscopy and Quantum Chemical Calculation Studies of the Conformational Dependence on the Electronic Structure and Transitions of Cyclohexane, Methyl and Dimethyl Cyclohexane, and Decalin; Effects of Axial Substitutions on the Electronic Transitions.

Yusuke MorisawaYugo HigakiYukihiro Ozaki
Published in: The journal of physical chemistry. A (2021)
Far-ultraviolet (FUV) spectra were measured for cyclohexane, methyl cyclohexane, six isomers of dimethyl cyclohexane, and cis- and trans-decalin. Attenuated total reflection-FUV (ATR-FUV) spectroscopy, which we originally proposed, provides systematic information about the excitation states of saturated organic molecules and the hyperconjugation of σ bonds. The FUV spectra of cyclohexane and methyl cyclohexane in neat liquids showed a band with central wavelengths near 155 and 162 nm. The simulation spectrum of cyclohexane calculated by time-dependent density-functional theory (TD-DFT) (CAM-B3LYP/aug-cc-pVTZ) gives two bands at 146 and 152 nm owing to the transition from HOMO-2 to Rydberg 3pz (Tb) and those from HOMO and HOMO-1 to Rydberg 3px/3py (Ta), respectively. The simulation spectrum of methyl cyclohexane with the equatorial substituent has peaks at approximately the same positions as cyclohexane. The calculated molar absorption coefficient is larger than that of cyclohexane, estimating the observed FUV spectra very well. The FUV spectra of dimethyl cyclohexane with two methyl substituents at the equatorial positions (trans-1,2-, cis-1,3-, and trans-1,4-) and trans-decalin had similar features to those of cyclohexane and methylcyclohexane. The TD-DFT calculations revealed that the shoulders at the shorter- and longer-wavelength sides of the band center of dimethyl cyclohexane (with methyl substituents at equatorial positions) and trans-decalin are assigned to Tb and Ta, respectively. In the case of dimethyl cyclohexane with one methyl substituent in the axial position (cis-1,2-, trans-1,3-, and cis-1,4-) and cis-decalin, the band caused by Tb decreased compared to those of the other compounds. The decrease in intensity and the longer-wavelength shift of the Tb band for dimethyl cyclohexane (with one methyl group at the axial position) and cis-decalin revealed that the band on the longer-wavelength side was assigned to the overlap band of Ta and Tb. The reason for such a large spectral alternation for the axial substitution may be the increase in the orbital energy of HOMO-2, which has its electron density concentrated at the axial C-H bond. Regarding the effect of the hyperconjugation of C-C and C-H σ orbitals, the second perturbation energies of the interaction between Cα-Hax and Cβ-Hax were estimated for molecules by natural bond orbital (NBO) analysis. There is a correlation between the orbital energies of HOMO-2 and the changes in vicinal interaction by axial substitution.
Keyphrases
  • density functional theory
  • molecular dynamics
  • magnetic resonance imaging
  • healthcare
  • single molecule
  • oxidative stress
  • mass spectrometry
  • dna damage response
  • dna repair
  • health information
  • monte carlo